Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3239
Gene Symbol: HOXD13
HOXD13
0.010 Biomarker disease BEFREE Synpolydactyly (type II syndactyly) with aplasia/hypoplasia of the middle phalanges of the toes: report on a family with eight affected members in four generations. 7717427 1995
Entrez Id: 1080
Gene Symbol: CFTR
CFTR
0.070 Biomarker disease BEFREE CFTR gene mutations frequently contribute to maldevelopment of the vas deferens but vasal agenesis can occur without any evidence of CFTR defects. 8627844 1996
Entrez Id: 6223
Gene Symbol: RPS19
RPS19
0.030 Biomarker disease BEFREE Diamond-Blackfan anemia (DBA) is an inherited pure red blood cell aplasia that often requires lifelong transfusional support. 8630424 1996
Entrez Id: 6223
Gene Symbol: RPS19
RPS19
0.030 Biomarker disease BEFREE Diamond-Blackfan anemia (DBA) is a congenital pure red blood cell aplasia diagnosed in the first year of life. 9009445 1997
Entrez Id: 6223
Gene Symbol: RPS19
RPS19
0.030 Biomarker disease BEFREE Diamond-Blackfan anemia (DBA) is a congenital pure red blood cell aplasia that often requires lifelong transfusional therapy. 9357971 1997
Entrez Id: 84168
Gene Symbol: ANTXR1
ANTXR1
0.010 GeneticVariation disease BEFREE A biallelic ANTXR1 variant expands the anthrax toxin receptor associated phenotype to tooth agenesis. 29436111 2018
Entrez Id: 5083
Gene Symbol: PAX9
PAX9
0.100 GeneticVariation disease BEFREE A case-control study was performed on 50 subjects with sporadic tooth agenesis (cases) and 100 healthy controls, which genotyped a PAX9 gene polymorphism (rs4904210). 23857653 2013
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.040 GeneticVariation disease BEFREE A haplotype involving the most 5'IRF6 markers was associated with sporadic tooth agenesis (p=0.006). 18452891 2008
Entrez Id: 1080
Gene Symbol: CFTR
CFTR
0.070 GeneticVariation disease BEFREE A higher prevalence of cystic fibrosis transmembrane regulator (CFTR) gene mutations has been suggested both in men affected by congenital aplasia of the vas deferens, and in individuals presenting with reduced sperm quality. 10402399 1999
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE A human MSX1 homeodomain missense mutation causes selective tooth agenesis. 8696335 1996
Entrez Id: 8313
Gene Symbol: AXIN2
AXIN2
0.100 Biomarker disease BEFREE A number of different genes have been shown to be associated with cases of tooth agenesis including AXIN2, IRF6, FGFR1, MSX1, PAX9, and TGFA. 29893310 2018
Entrez Id: 2645
Gene Symbol: GCK
GCK
0.010 Biomarker disease BEFREE A panel of pancreas development genes, including GCK, Kir6.2, PTF1A, PDX-1, HNF-1A, NgN3, SOX17, SOX7, SOX9, INS, HNF1-B and SUR1 plus the GATA4 gene, were screened for characterization of pancreatic agenesis and cardiac defect. 20854389 2010
Entrez Id: 2138
Gene Symbol: EYA1
EYA1
0.020 GeneticVariation disease BEFREE A proposed new contiguous gene syndrome on 8q consists of Branchio-Oto-Renal (BOR) syndrome, Duane syndrome, a dominant form of hydrocephalus and trapeze aplasia; implications for the mapping of the BOR gene. 7849713 1994
Entrez Id: 55143
Gene Symbol: CDCA8
CDCA8
0.010 GeneticVariation disease BEFREE A proposed new contiguous gene syndrome on 8q consists of Branchio-Oto-Renal (BOR) syndrome, Duane syndrome, a dominant form of hydrocephalus and trapeze aplasia; implications for the mapping of the BOR gene. 7849713 1994
Entrez Id: 2255
Gene Symbol: FGF10
FGF10
0.030 GeneticVariation disease BEFREE Affected patients may have aplasia or hypoplasia or minimal involvement of these glands, as there is considerable variation in expressivity [M. Entesarian, et al., Mutations in the gene encoding fibroblast growth factor 10 are associated with aplasia of lacrimal and salivary glands, Nat.Genet.37 (2) (2005) 125-127]. 19376597 2009
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.040 GeneticVariation disease BEFREE After that, the coding exons of BMP4 were examined in 114 TA patients using Sanger sequencing. 31128441 2019
Entrez Id: 5083
Gene Symbol: PAX9
PAX9
0.100 GeneticVariation disease BEFREE Aggregating the available data, there does not seem to exist a clear association between the alanine 240 for proline variant in the PAX9 gene and the MLIA phenotype. 20660504 2010
Entrez Id: 4040
Gene Symbol: LRP6
LRP6
0.010 GeneticVariation disease BEFREE All four affected individuals harboring a LRP6 mutation had a family history of tooth agenesis. 26387593 2015
Entrez Id: 7476
Gene Symbol: WNT7A
WNT7A
0.010 GeneticVariation disease BEFREE All lines of evidence suggest that WNT7A has important role in tooth development and its mutation may lead to tooth agenesis, microdontia, and taurodontism. 28917830 2017
Entrez Id: 5083
Gene Symbol: PAX9
PAX9
0.100 GeneticVariation disease BEFREE All mutations of PAX9 identified to date have been associated with nonsyndromic form of tooth agenesis. 16333316 2006
Entrez Id: 2260
Gene Symbol: FGFR1
FGFR1
0.030 Biomarker disease BEFREE Also it appears that preferential premolar agenesis is associated with FGFR1 (P = 0.014) and IRF6 (P = 0.002) markers. 17318851 2007
Entrez Id: 4318
Gene Symbol: MMP9
MMP9
0.010 Biomarker disease BEFREE Also, there was a significant difference in MMP9 distribution between tooth agenesis in the maxilla and control individuals (P = 0.03). 24351915 2013
Entrez Id: 947
Gene Symbol: CD34
CD34
0.010 Biomarker disease BEFREE Although CD34+ viable cells enumeration is a key predictor of time to correction of aplasia, it does not fully inform about functionality of cells contained in the graft. 31257121 2019
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE Although our results are consistent with a lack of association of MSX1 rs12532 and the risk of unilateral NSCLP and tooth agenesis, further studies with additional SNPs and a more diverse ethnic cohort are warranted. 31568994 2020
Entrez Id: 8820
Gene Symbol: HESX1
HESX1
0.020 Biomarker disease BEFREE Alu-element insertion in the homeodomain of HESX1 and aplasia of the anterior pituitary. 15841484 2005