Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5083
Gene Symbol: PAX9
PAX9
0.100 GeneticVariation disease BEFREE Among these, a frameshift mutation (219InsG) within the paired domain of PAX9 produces a protein product associated with a severe form of molar agenesis in a single family. 14607846 2004
Entrez Id: 57167
Gene Symbol: SALL4
SALL4
0.010 GeneticVariation disease BEFREE An atypical 0.73 MB microduplication of 22q11.21 and a novel SALL4 missense mutation associated with thumb agenesis and radioulnar synostosis. 25823593 2015
Entrez Id: 1080
Gene Symbol: CFTR
CFTR
0.070 GeneticVariation disease BEFREE Analysis of the whole CFTR coding regions and splice junctions in azoospermic men with congenital bilateral aplasia of epididymis or vas deferens. 7513294 1994
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.040 GeneticVariation disease BEFREE As BMP4 is essential for the development of teeth and also for many other organs, it would be of considerable interest to find a BMP4 mutation that is associated only with tooth agenesis. 23841782 2013
Entrez Id: 5087
Gene Symbol: PBX1
PBX1
0.010 GeneticVariation disease BEFREE As previously reported, Pbx1 homozygous mutant mice (Pbx1-/-) develop malformations and hypoplasia or aplasia of multiple organs, including the craniofacial skeleton, ear, branchial arches, heart, lungs, diaphragm, gut, kidneys, and gonads. 29036646 2017
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE Associations between the risk of tooth agenesis and single-nucleotide polymorphisms of MSX1 and PAX9 genes in nonsyndromic cleft patients. 23718693 2013
Entrez Id: 4312
Gene Symbol: MMP1
MMP1
0.010 Biomarker disease BEFREE Associations between tooth agenesis and MMP1 (p=0.007), and MMP20 (p=0.03) were found in Brazilian families. 21144496 2011
Entrez Id: 4081
Gene Symbol: MAB21L1
MAB21L1
0.010 GeneticVariation disease BEFREE Autosomal recessive truncating MAB21L1 mutation associated with a syndromic scrotal agenesis. 27103078 2017
Entrez Id: 5083
Gene Symbol: PAX9
PAX9
0.100 Biomarker disease BEFREE Based on our observed defects in DNA binding by the mutant protein, we propose a loss-of-function mechanism that contributes to haploinsufficiency of PAX9 in this family with posterior tooth agenesis. 16479262 2006
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE Based on previous in vitro experiments on mutation disrupting function of Msx1 homeodomain, we assume that the heterozygous g.8177G>T nonsense mutation affects the amount and function of Msx1 protein and leads to tooth agenesis. 30192788 2018
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE Because Msx1(R31P) appears to be inactive and does not affect the action of wild-type Msx1, we propose that the phenotype of affected individuals with selective tooth agenesis is due to haploinsufficiency. 9742121 1998
Entrez Id: 54757
Gene Symbol: FAM20A
FAM20A
0.010 GeneticVariation disease BEFREE Biallelic loss-of-function mutations of human FAM20A have been known to cause enamel-renal syndrome (ERS), featured by agenesis of dental enamel, nephrocalcinosis, and other orodental abnormalities, including gingival hyperplasia. 31131889 2019
Entrez Id: 80326
Gene Symbol: WNT10A
WNT10A
0.100 GeneticVariation disease BEFREE Both single-marker and haplotype analyses showed highly significant association between SNPs in the WNT10A gene and the risk for tooth agenesis. 23167694 2013
Entrez Id: 2304
Gene Symbol: FOXE1
FOXE1
0.010 Biomarker disease BEFREE By direct sequencing of the PCR products of TITF2, we screened the genomic DNA from 46 patients with thyroid dysgenesis (five had agenesis, six had hypoplasia, 15 had ectopy, and 20 were undetermined). 11580993 2001
Entrez Id: 80326
Gene Symbol: WNT10A
WNT10A
0.100 Biomarker disease BEFREE By including WNT10A in the DNA diagnostics of isolated tooth agenesis, the yield of molecular testing in this condition was significantly increased from 15% to 71%. 22581971 2012
Entrez Id: 5083
Gene Symbol: PAX9
PAX9
0.100 GeneticVariation disease BEFREE Characterization of PAX9 variant P20L identified in a Japanese family with tooth agenesis. 29023497 2017
Entrez Id: 1432
Gene Symbol: MAPK14
MAPK14
0.020 Biomarker disease BEFREE Cleft-side MxI2 agenesis in CLP subjects appears to be largely a genetically controlled anomaly associated with cleft development, rather than a collateral environmental consequence of the adjacent cleft defect, since increased hypodontia involving multiple missing teeth observed remote from a cleft clearly has a significant genetic basis. 22612415 2012
Entrez Id: 8048
Gene Symbol: CSRP3
CSRP3
0.010 Biomarker disease BEFREE Cleft-side MxI2 agenesis in CLP subjects appears to be largely a genetically controlled anomaly associated with cleft development, rather than a collateral environmental consequence of the adjacent cleft defect, since increased hypodontia involving multiple missing teeth observed remote from a cleft clearly has a significant genetic basis. 22612415 2012
Entrez Id: 810
Gene Symbol: CALML3
CALML3
0.010 Biomarker disease BEFREE Cleft-side MxI2 agenesis in CLP subjects appears to be largely a genetically controlled anomaly associated with cleft development, rather than a collateral environmental consequence of the adjacent cleft defect, since increased hypodontia involving multiple missing teeth observed remote from a cleft clearly has a significant genetic basis. 22612415 2012
Entrez Id: 23406
Gene Symbol: COTL1
COTL1
0.010 Biomarker disease BEFREE Cleft-side MxI2 agenesis in CLP subjects appears to be largely a genetically controlled anomaly associated with cleft development, rather than a collateral environmental consequence of the adjacent cleft defect, since increased hypodontia involving multiple missing teeth observed remote from a cleft clearly has a significant genetic basis. 22612415 2012
Entrez Id: 860
Gene Symbol: RUNX2
RUNX2
0.030 Biomarker disease BEFREE Cleidocranial dysplasia (CCD, MIM#119600), for which the responsible gene is RUNX2, is a genetic disorder characterized by hypoplasia or aplasia of the clavicles, patent fontanelles, and a short stature. 21040462 2010
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.100 GeneticVariation disease BEFREE Coding mutations in MSX1 are not the cause of orofacial clefting with or without tooth agenesis in this study population. 16723652 2006
Entrez Id: 5083
Gene Symbol: PAX9
PAX9
0.100 GeneticVariation disease BEFREE Considering the discrepancy between the high incidence rate of agenesis and the relatively small number of reported causative mutations in PAX9, MSX1 and AXIN2 genes, the genetic contribution to oligodontia probably is much more heterogeneous than expected so far. 16918677 2006
Entrez Id: 6657
Gene Symbol: SOX2
SOX2
0.010 AlteredExpression disease BEFREE Consistently, Sox2 ablation in mice causes esophageal agenesis. 30244869 2018
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
0.020 GeneticVariation disease BEFREE Crossing IP<sub>3</sub>R-LacZ mice with mice hypomorphic for Tbx1 alleles revealed that PTA of Tbx1 mutants may result from agenesis or hypoplasia of the pulmonary trunk; thus, the left and right central to peripheral PAs connect directly to the dorsal side of the truncus arteriosus in these mutants. 31758944 2020