Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3592
Gene Symbol: IL12A
IL12A
0.640 Biomarker disease BEFREE Our data revealed that TLR stimulation of PBC (n = 17) and pSS monocytes (n = 6) resulted in significant induction of IL12A mRNA (p < 0.05, p < 0.01, respectively) compared to PSC monocytes (n = 13) and at similar levels to HC monocytes (n = 8). 30119881 2018
Entrez Id: 3592
Gene Symbol: IL12A
IL12A
0.640 GeneticVariation disease BEFREE Fine-mapping analysis showed that a five-allele haplotype in the 3' flank of IL12A was significantly associated with primary biliary cirrhosis (P=1.15x10(-34)). 19458352 2009
Entrez Id: 3592
Gene Symbol: IL12A
IL12A
0.640 GeneticVariation disease BEFREE Here, we performed an association analysis between IL12A, IL12RB, and signal transducer and activator of transcription 4 (STAT4) genetic variations and susceptibility to PBC. 24648611 2014
Entrez Id: 3592
Gene Symbol: IL12A
IL12A
0.640 Biomarker disease BEFREE In addition, the risk alleles of the 2 SNPs were significantly associated with down-regulation of SCHIP1, a celiac disease susceptible gene, 91.5 kb upstream of IL12A.These results not only demonstrated that IL12A is associated with PBC in the Chinese Han population but also identified a potential mechanism for its involvement in the pathogenesis of PBC. 27175695 2016
Entrez Id: 6689
Gene Symbol: SPIB
SPIB
0.620 GeneticVariation disease BEFREE We fine mapped two primary biliary cirrhosis (PBC) risk loci, CLEC16A (C-type lectin domain family 16 member A)-suppressor of cytokine signaling 1 (SOCS1) and Spi-B protein (SPIB) and sequenced a locus, sialic acid acetylesterase (SIAE), proposed to harbor autoimmunity-associated mutations. 22257840 2012
Entrez Id: 6689
Gene Symbol: SPIB
SPIB
0.620 Biomarker disease BEFREE To examine the genetics of susceptibility to primary biliary cirrhosis (PBC), genome-wide association studies GWAS have been performed in patients of European ancestry and have shown the significant associations of IL12-related pathways, SPIB, IRF5-TNPO3, and 17q12-21. 21506939 2011
Entrez Id: 1244
Gene Symbol: ABCC2
ABCC2
0.520 Biomarker disease BEFREE Double immunofluorescence labeling with a canalicular marker (dipeptidyl peptidase IV) demonstrated proper canalicular localization of BSEP and MRP2 in PBC. 12763363 2003
Entrez Id: 3594
Gene Symbol: IL12RB1
IL12RB1
0.520 Biomarker disease BEFREE <i>Background</i>.Recent GWAS in primary biliary cholangitis (PBC) showed strong associations with SNPs located within interleukin-12 receptor (IL12R) beta-2 <i>(IL12RB2)</i> gene.<i>Aims</i>. 28299343 2017
Entrez Id: 1244
Gene Symbol: ABCC2
ABCC2
0.520 Biomarker disease BEFREE We investigated the uptake transporters OATP2 (SLC21A6), OATP8 (SLC21A8), and NTCP (SLC10A1), the export pumps MRP2 (ABCC2), MRP3 (ABCC3), MRP6 (ABCC6), and P-glycoproteins (ABCB1, ABCB4, ABCB11), and radixin, in non-icteric primary biliary cirrhosis (PBC stages I-III) and control human liver needle-biopsies using immunofluorescence microscopy and semi-quantitative RT-PCR. 14568249 2003
Entrez Id: 3594
Gene Symbol: IL12RB1
IL12RB1
0.520 GeneticVariation disease BEFREE Here, we performed an association analysis between IL12A, IL12RB, and signal transducer and activator of transcription 4 (STAT4) genetic variations and susceptibility to PBC. 24648611 2014
Entrez Id: 9966
Gene Symbol: TNFSF15
TNFSF15
0.480 Biomarker disease BEFREE Furthermore, significantly increased TL1A had been detected in liver tissues and mononuclear cells of patients with primary biliary cirrhosis (PBC). 30906791 2019
Entrez Id: 9966
Gene Symbol: TNFSF15
TNFSF15
0.480 Biomarker disease BEFREE TNFSF15 and ICOSLG-CXCR5 might constitute a shared pathogenic pathway in the development of PBC and CD in the Japanese population, whereas IL12B-STAT4-NFKB1 might constitute an opposite pathogenic pathway, reflecting the different balance between Th1 and Th17 in the two diseases. 26084578 2015
Entrez Id: 9966
Gene Symbol: TNFSF15
TNFSF15
0.480 GeneticVariation disease BEFREE Along with corroborating known PBC-associated loci (TNFSF15, HLA-DRA), risk haplotypes may potentially model cis-interactions that regulate gene expression. 29773854 2018
Entrez Id: 9966
Gene Symbol: TNFSF15
TNFSF15
0.480 GeneticVariation disease BEFREE A previous genome-wide association study (GWAS) performed in 963 Japanese individuals (487 primary biliary cholangitis [PBC] cases and 476 healthy controls) identified TNFSF15 (rs4979462) and POU2AF1 (rs4938534) as strong susceptibility loci for PBC. 28062665 2017
Entrez Id: 9966
Gene Symbol: TNFSF15
TNFSF15
0.480 Biomarker disease BEFREE This suggests that modulation of TL1A-DR3 interaction may be a potential therapeutic target in several autoimmune diseases, including IBD, RA, AS, and PBC. 24453414 2013
Entrez Id: 9966
Gene Symbol: TNFSF15
TNFSF15
0.480 AlteredExpression disease BEFREE In summary, we provide evidence that variance within TNFSF15 has the potential to affect cytokine expression across a range of tissues and thereby contribute to protection from infectious diseases such as leprosy, while increasing the risk of immune-mediated diseases including CD and PBC. 27507062 2016
Entrez Id: 9966
Gene Symbol: TNFSF15
TNFSF15
0.480 GeneticVariation disease BEFREE This study identified the causal variant for PBC susceptibility in the TNFSF15 locus and clarified its underlying molecular mechanism. 25899471 2015
Entrez Id: 9966
Gene Symbol: TNFSF15
TNFSF15
0.480 GeneticVariation disease BEFREE Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population. 23000144 2012
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.470 Biomarker disease BEFREE Immunogenetic studies have identified polymorphisms of the IL-12/STAT4 pathway as being associated with PBC. 31803181 2019
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.470 GeneticVariation disease BEFREE The effect of ICOSLG and CXCR5 variants were concordant but the effect of STAT4, NFKB1 and IL12B variants were discordant for PBC and CD. 26084578 2015
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.470 PosttranslationalModification disease BEFREE This effect was mediated by the rapid and strong phosphorylation of STAT4 on Treg cells from patients with PBC and pSS (p < 0.05) but not PSC and HC. 30119881 2018
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.470 Biomarker disease BEFREE Potential functional implications of key findings are discussed including the IL-12/STAT4 pathway in PBC and the CD28/IL-2 pathway in PSC. 26347073 2016
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.470 GeneticVariation disease BEFREE STAT4 gene polymorphism has been shown to be associated with the antiviral response in chronic hepatitis C and drug-induced liver injury (DILI), primary biliary cirrhosis (PBC), HCV-associated liver fibrosis and in hepatocellular carcinoma (HCC). 25798064 2015
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.470 GeneticVariation disease BEFREE Among 21 non-HLA susceptibility loci for PBC identified in GWASs of individuals of European descent, three loci (IL7R, IKZF3, and CD80) showed significant associations (combined p = 3.66 × 10(-8), 3.66 × 10(-9), and 3.04 × 10(-9), respectively) and STAT4 and NFKB1 loci showed suggestive association with PBC (combined p = 1.11 × 10(-6) and 1.42 × 10(-7), respectively) in the Japanese population. 23000144 2012
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.470 Biomarker disease BEFREE Our findings confirm that STAT4 is involved in PBC susceptibility and may play a role in ANA status in the Japanese population. 24648611 2014