Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3021
Gene Symbol: H3-3B
H3-3B
0.390 GeneticVariation disease BEFREE Examples include giant cell tumour of bone (H3F3A p.G34W), chondroblastoma (H3F3B p.K36M), mesenchymal chondrosarcoma (HEY1-NCOA2), chondromyxoid fibroma (GRM1 rearrangements), aneurysmal bone cyst (USP6 rearrangements), osteoblastoma/osteoid osteoma (FOS/FOSB rearrangements), and synovial chondromatosis (FN1-ACVR2A and ACVR2A-FN1). 30582658 2019
Entrez Id: 3021
Gene Symbol: H3-3B
H3-3B
0.390 GeneticVariation disease BEFREE H3 histone family member 3A (H3F3A) (G34W/V/R/L) mutations are present in the majority of giant cell tumors (GCTs) of bone and H3 histone family member 3B (H3F3B) (K36M) mutations are present in nearly all chondroblastomas, but are absent in histologic mimics. 29757500 2018
Entrez Id: 3021
Gene Symbol: H3-3B
H3-3B
0.390 Biomarker disease BEFREE We used the antibody for analysis of 22 H3F3A-mutated GCTB, including two patients with recurrences; for comparison we analysed a cohort of 36 H3F3A wild-type giant cell-rich lesions of the bone and soft tissue, containing one brown tumour, six aneurysmal bone cysts (ABC), six chondroblastomas, five non-ossifying-fibromas, two fibrous dysplasias, nine tenosynovial giant cell tumours, one giant cell-rich sarcoma and six osteosarcomas. 28211081 2017
Entrez Id: 3021
Gene Symbol: H3-3B
H3-3B
0.390 Biomarker disease BEFREE H3F3A and H3F3B were found in 85% of giant cell tumors of the bone and 88% of chondroblastomas. 28059095 2017
Entrez Id: 3021
Gene Symbol: H3-3B
H3-3B
0.390 GeneticVariation disease BEFREE Recent studies have identified a somatic and heterozygous mutation at the H3F3B gene in over 90% chondroblastoma cases, leading to a lysine 36 to methionine replacement (H3.3K36M). 28129023 2017
Entrez Id: 3021
Gene Symbol: H3-3B
H3-3B
0.390 GeneticVariation disease BEFREE Although more than 90% of GCTBs present histone 3.3 variants exclusively in the H3F3A gene, chondroblastoma is mutated mainly in H3F3B. 28899740 2017
Entrez Id: 3021
Gene Symbol: H3-3B
H3-3B
0.390 GeneticVariation disease BEFREE One thousand eight hundred and ninety-four tumours, including 85 chondroblastomas and 10 clear-cell chondrosarcomas, were studied; of these, 82 chondroblastomas and one clear-cell chondrosarcoma known to harbour the H3F3 p.K36M mutation expressed the mutated protein. 26844533 2016
Entrez Id: 3021
Gene Symbol: H3-3B
H3-3B
0.390 GeneticVariation disease BEFREE Our results show that H3F3A and H3F3B mutation analysis appears to be a highly specific, although less sensitive, diagnostic tool for the distinction of GCTB and chondroblastoma from other giant cell-containing tumors. 26457357 2015
Entrez Id: 3021
Gene Symbol: H3-3B
H3-3B
0.390 Biomarker disease CTD_human In 73 of 77 cases of chondroblastoma (95%), we found p.Lys36Met alterations predominantly encoded in H3F3B, which is one of two genes for histone H3.3. 24162739 2013
Entrez Id: 3021
Gene Symbol: H3-3B
H3-3B
0.390 GeneticVariation disease BEFREE In 73 of 77 cases of chondroblastoma (95%), we found p.Lys36Met alterations predominantly encoded in H3F3B, which is one of two genes for histone H3.3. 24162739 2013
Entrez Id: 3020
Gene Symbol: H3-3A
H3-3A
0.090 GeneticVariation disease BEFREE Examples include giant cell tumour of bone (H3F3A p.G34W), chondroblastoma (H3F3B p.K36M), mesenchymal chondrosarcoma (HEY1-NCOA2), chondromyxoid fibroma (GRM1 rearrangements), aneurysmal bone cyst (USP6 rearrangements), osteoblastoma/osteoid osteoma (FOS/FOSB rearrangements), and synovial chondromatosis (FN1-ACVR2A and ACVR2A-FN1). 30582658 2019
Entrez Id: 3020
Gene Symbol: H3-3A
H3-3A
0.090 GeneticVariation disease BEFREE H3 histone family member 3A (H3F3A) (G34W/V/R/L) mutations are present in the majority of giant cell tumors (GCTs) of bone and H3 histone family member 3B (H3F3B) (K36M) mutations are present in nearly all chondroblastomas, but are absent in histologic mimics. 29757500 2018
Entrez Id: 3020
Gene Symbol: H3-3A
H3-3A
0.090 GeneticVariation disease BEFREE Although more than 90% of GCTBs present histone 3.3 variants exclusively in the H3F3A gene, chondroblastoma is mutated mainly in H3F3B. 28899740 2017
Entrez Id: 3020
Gene Symbol: H3-3A
H3-3A
0.090 Biomarker disease BEFREE We used the antibody for analysis of 22 H3F3A-mutated GCTB, including two patients with recurrences; for comparison we analysed a cohort of 36 H3F3A wild-type giant cell-rich lesions of the bone and soft tissue, containing one brown tumour, six aneurysmal bone cysts (ABC), six chondroblastomas, five non-ossifying-fibromas, two fibrous dysplasias, nine tenosynovial giant cell tumours, one giant cell-rich sarcoma and six osteosarcomas. 28211081 2017
Entrez Id: 3020
Gene Symbol: H3-3A
H3-3A
0.090 Biomarker disease BEFREE H3F3A and H3F3B were found in 85% of giant cell tumors of the bone and 88% of chondroblastomas. 28059095 2017
Entrez Id: 3020
Gene Symbol: H3-3A
H3-3A
0.090 GeneticVariation disease BEFREE Recent studies have identified a somatic and heterozygous mutation at the H3F3B gene in over 90% chondroblastoma cases, leading to a lysine 36 to methionine replacement (H3.3K36M). 28129023 2017
Entrez Id: 3020
Gene Symbol: H3-3A
H3-3A
0.090 GeneticVariation disease BEFREE One thousand eight hundred and ninety-four tumours, including 85 chondroblastomas and 10 clear-cell chondrosarcomas, were studied; of these, 82 chondroblastomas and one clear-cell chondrosarcoma known to harbour the H3F3 p.K36M mutation expressed the mutated protein. 26844533 2016
Entrez Id: 3020
Gene Symbol: H3-3A
H3-3A
0.090 GeneticVariation disease BEFREE Our results show that H3F3A and H3F3B mutation analysis appears to be a highly specific, although less sensitive, diagnostic tool for the distinction of GCTB and chondroblastoma from other giant cell-containing tumors. 26457357 2015
Entrez Id: 3020
Gene Symbol: H3-3A
H3-3A
0.090 GeneticVariation disease BEFREE In 73 of 77 cases of chondroblastoma (95%), we found p.Lys36Met alterations predominantly encoded in H3F3B, which is one of two genes for histone H3.3. 24162739 2013
Entrez Id: 6662
Gene Symbol: SOX9
SOX9
0.020 GeneticVariation disease BEFREE Recently, immunohistochemical stains such as DOG1 and SOX9 have been described in chondroblastoma, and K36M mutations in either the H3F3A or H3F3B genes have also been identified. 28557595 2017
Entrez Id: 6662
Gene Symbol: SOX9
SOX9
0.020 AlteredExpression disease BEFREE Strong nuclear expression of Sox9 was detected in all chondroblastomas, whereas nearly half of the osteoblastomas showed focal weak cytoplasmic expression of Sox9. 21078438 2010
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.010 Biomarker disease BEFREE Immunohistochemical staining with antibodies against H3K36M, trimethylated histones (H3K27me3 and H3K36me3) and an osteoblastic marker (SATB2) was performed on 27 chondroblastomas from 27 patients. 30098026 2019
Entrez Id: 6598
Gene Symbol: SMARCB1
SMARCB1
0.010 Biomarker disease BEFREE We herein focus on novel immunohistochemical markers, based on molecular genetic alterations, which are particularly useful in the diagnostic workup of selected groups of soft tissue and bone tumors, including recently described entities, specifically round cell sarcomas (Ewing sarcoma, CIC-rearranged sarcoma, and BCOR-rearranged sarcoma), vascular tumors (epithelioid hemangioma, epithelioid hemangioendothelioma, and pseudomyogenic hemangioendothelioma), SMARCB1-deficient neoplasms, adipocytic tumors (spindle cell/pleomorphic lipoma, atypical spindle cell lipomatous tumor, and conventional atypical lipomatous tumor), giant cell-rich bone tumors (giant cell tumor of bone and chondroblastoma), and biphenotypic sinonasal sarcoma. 30134255 2018
Entrez Id: 54880
Gene Symbol: BCOR
BCOR
0.010 Biomarker disease BEFREE We herein focus on novel immunohistochemical markers, based on molecular genetic alterations, which are particularly useful in the diagnostic workup of selected groups of soft tissue and bone tumors, including recently described entities, specifically round cell sarcomas (Ewing sarcoma, CIC-rearranged sarcoma, and BCOR-rearranged sarcoma), vascular tumors (epithelioid hemangioma, epithelioid hemangioendothelioma, and pseudomyogenic hemangioendothelioma), SMARCB1-deficient neoplasms, adipocytic tumors (spindle cell/pleomorphic lipoma, atypical spindle cell lipomatous tumor, and conventional atypical lipomatous tumor), giant cell-rich bone tumors (giant cell tumor of bone and chondroblastoma), and biphenotypic sinonasal sarcoma. 30134255 2018
Entrez Id: 2260
Gene Symbol: FGFR1
FGFR1
0.010 AlteredExpression disease BEFREE By contrast, 121 cases of potential morphologic mimics (belonging to 13 tumor types) rarely expressed FGFR1, the main exceptions being solitary fibrous tumors (positive in 40%), chondroblastomas (40%), and giant cell tumors of bone (38%), suggesting a possible role for FGFR1 immunohistochemistry in the diagnosis of phosphaturic mesenchymal tumor. 27443518 2016