Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 472
Gene Symbol: ATM
ATM
0.100 GeneticVariation group BEFREE We found no consistent cytotoxicity or abrogation of ATM kinase activity after IR in seven heterozygous V2424G LCLs, compared to wild-type LCLs, but did find an increase in the number of chromosomal aberrations. 17001622 2006
Entrez Id: 952
Gene Symbol: CD38
CD38
0.100 GeneticVariation group BEFREE The tumor exhibited the distinctive cytogenetic abnormality t(X;18), together with a der(1)t(1;22)(p36;q12). 15163010 2004
Entrez Id: 613
Gene Symbol: BCR
BCR
0.100 GeneticVariation group BEFREE The abnormal haemopoietic precursor cells of chronic myeloid leukaemia (CML) carry the cytogenetic abnormality [t(9;22)(q34;q11)]--a reciprocal translocation that results in the expression of a chimaeric protein derived from the fused BCR and ABL genes. 14987402 2003
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE Studies of Li-Fraumeni syndrome fibroblasts heterozygous for germline TP53 mutations have shown that loss of heterozygosity (LOH) occurs during passaging and is associated with genomic instability, such as chromosomal aberrations and aneuploidy to investigate the genomic changes associated with LOH in Li-Fraumeni (LF) fibroblasts, we have analysed cell strains at increasing population doublings (PD) using Comparative Genomic Hybridization (CGH). 10945493 2000
Entrez Id: 28402
Gene Symbol: IGHV3-69-1
IGHV3-69-1
0.100 GeneticVariation group BEFREE The expression of ZAP-70 mRNA was significantly associated with Binet stage (P < 0.001), lactate dehydrogenase (P = 0.003), ZAP-70 protein (P = 0.018), IGHV mutational status (P = 0.038), and cytogenetic abnormality of del(17p13) or del(11q22.3) (P = 0.037) in CLL patients. 22362302 2012
Entrez Id: 25
Gene Symbol: ABL1
ABL1
0.100 GeneticVariation group BEFREE A total of nine well-defined chromosome aberrations with fusion gene transcripts were selected: t(1;19) with E2A-PBX1, t(4;11) with MLL-AF4, t(8;21) with AML1-ETO, t(9;22) with BCR-ABL p190 and BCR-ABL p210, t(12;21) with TEL-AML1, t(15;17) with PML-RARA, inv (16) with CBFB-MYH11, and microdeletion 1p32 with SIL-TAL1. 10602411 1999
Entrez Id: 923
Gene Symbol: CD6
CD6
0.100 GeneticVariation group BEFREE TEL-AML1 fusion oncogene (t 12; 21) is the most common chromosomal abnormality in childhood acute lymphoblastic leukemia (ALL). 24870754 2014
Entrez Id: 28402
Gene Symbol: IGHV3-69-1
IGHV3-69-1
0.100 GeneticVariation group BEFREE MDR-1, but not MDR-3 gene expression, is associated with unmutated IgVH genes and poor prognosis chromosomal aberrations in chronic lymphocytic leukemia. 17107902 2006
Entrez Id: 4609
Gene Symbol: MYC
MYC
0.100 GeneticVariation group BEFREE Nearly all BLs contain rearrangements of the MYC/8q24 region; however, recent cytogenetic studies suggest that certain secondary chromosomal aberrations in BL correlate with an adverse prognosis. 19895612 2010
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE This report describes the clinical and pathological characteristics of four CLL patients showing a new recurrent chromosomal abnormality dic(8;17)(p11;p11), that implied loss of the TP53 gene in all cases. 22150335 2012
Entrez Id: 3342
Gene Symbol: HTC2
HTC2
0.100 GeneticVariation group BEFREE The database is the first comprehensive integration of disparate cancer genome data like single nucleotide variants, single nucleotide polymorphisms, and chromosomal aberrations (CGH and FISH). 20127971 2010
Entrez Id: 102723407
Gene Symbol: LOC102723407
LOC102723407
0.100 GeneticVariation group BEFREE Clinical features and molecular/biologic factors such as ZAP-70, immunoglobulin heavy chain (IGHV) gene mutation status, and cytogenetic abnormalities on fluorescent in situ hybridization (FISH) have been found to be robust predictors of treatment-free survival and overall survival among newly diagnosed patients. 20008228 2009
Entrez Id: 861
Gene Symbol: RUNX1
RUNX1
0.100 GeneticVariation group BEFREE The t(8;21) RUNX1-ETO translocation is one of the most frequent cytogenetic abnormalities in acute myeloid leukemia (AML). 21937700 2012
Entrez Id: 4297
Gene Symbol: KMT2A
KMT2A
0.100 GeneticVariation group BEFREE An overall incidence of chromosomal anomalies, including t (9;22), MLL gene rearrangements, t (12;21), and numerical chromosomal anomalies of chromosomes 4, 10, 17 and 21 was found in 33 patients (65%). 14527352 2003
Entrez Id: 102724971
Gene Symbol: LOC102724971
LOC102724971
0.100 GeneticVariation group BEFREE A strong overall correlation existed between the presence of different chromosome abnormalities and a number of prognostic factors including immunoglobulin heavy chain variable region mutation status (P = 0.011), time to treatment (P = 0.025) and lymphocyte doubling time (P = 0.034). 15686453 2005
Entrez Id: 238
Gene Symbol: ALK
ALK
0.100 GeneticVariation group BEFREE Reports of extrapulmonary IP have identified clonal chromosomal aberrations involving 2p23 in the region of the ALK gene. 11331960 2001
Entrez Id: 7517
Gene Symbol: XRCC3
XRCC3
0.100 GeneticVariation group BEFREE A protective effect of the XRCC3 241Met allele was only found in the older age group in non-smokers for CA, CSA and CTA, and in smokers for CSA. 16997330 2006
Entrez Id: 675
Gene Symbol: BRCA2
BRCA2
0.100 GeneticVariation group BEFREE Since un- or misrepaired DSB lead to chromosomal anomalies which may promote the development of breast cancer, we have studied the potential of mammography X-rays for immediate and delayed induction of chromosomal anomalies in human primary fibroblasts from BRCA1 and BRCA2 mutation carriers. 22788243 2012
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE We conclude that 1) FISH is a simple and sensitive technique for the detection of numerical and structural chromosome abnormalities; 2) Its application to uncultured samples obviates the alteration of results originated by the probable growth advantage of the normal or neoplastic cell population in vitro; 3) Trisomy 12 appears to define a B-CLL subgroup of atypical morphology; and 4) The p53 deletion is correlated with advanced stage of disease and resistance to treatment. 8830719 1996
Entrez Id: 4869
Gene Symbol: NPM1
NPM1
0.100 GeneticVariation group BEFREE NPM1 mutations were associated with the absence of chromosomal aberrations (P=0.007) and FLT3/ITD (P=0.018). 23511494 2013
Entrez Id: 2120
Gene Symbol: ETV6
ETV6
0.100 GeneticVariation group BEFREE t(12;22)(p13;q12) is a rare but recurrent chromosomal abnormality involving the ETS transcription factor ETV6 and meningioma 1 (MN1) genes. 29273914 2018
Entrez Id: 947
Gene Symbol: CD34
CD34
0.100 GeneticVariation group BEFREE Patients with this cytogenetic abnormality showed higher frequency of CD34 (P = 0.003), HLA-DR (P = 0.03), Tdt (P = 0.02), CD19 (P < 0.0001), and CD56 (P < 0.0001) and lower CD33 (P = 0.0001). 14692523 2003
Entrez Id: 923
Gene Symbol: CD6
CD6
0.100 GeneticVariation group BEFREE Study of two complex chromosome abnormalities associated with t(12;21) emphasizes the importance of using FISH in detection of such translocations. 9305591 1997
Entrez Id: 3492
Gene Symbol: IGH
IGH
0.100 GeneticVariation group BEFREE Multiprobe FISH detected the chromosomal aberrations identified by G-banding, as well as additional aberrations in 6 of 30 (20.0%) cases, which included ETV6/RUNX1 translocation, p16 deletion, TP53 deletion, and IGH break-apart. 24790906 2014
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE However, both cell systems have suboptimal features, with HaCaT cells exhibiting a large number of chromosomal aberrations and mutated p53 tumor suppressor, whereas primary keratinocytes are short-lived, heterogeneous and not susceptible to genetic modifications due to their restricted life-span. 31247885 2019