Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE Proinflammatory IL-1beta polymorphisms are associated with hypochlorhydria and atrophic gastritis in Japan. 12105837 2002
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE We investigated the influence of bacterial virulence factors and host IL-1 polymorphisms on the development of histologic abnormalities in 210 Helicobacter pylori-infected patients with chronic gastritis. cagA(+)/vacAs1(+) H. pylori strains were associated with intestinal metaplasia (IM), atrophic gastritis (AG), and severe inflammation. 12854083 2003
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease LHGDN Interleukin 1beta polymorphisms increase risk of hypochlorhydria and atrophic gastritis and reduce risk of duodenal ulcer recurrence in Japan. 12105837 2002
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE The aim of this study was to evaluate the relationship between IL1B and IL1 receptor antagonist gene polymorphisms and the risk of multifocal atrophic gastritis in African Americans and Caucasians. 16405550 2006
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE The alleles IL-1β-31C and IL-1RN were associated with an increased risk of developing gastric carcinoma, and IL-1β-511T with an increased risk of developing chronic atrophic gastritis with no significant association of developing gastric carcinoma. 27340011 2016
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE Interleukin-1beta (IL-1beta) polymorphisms are associated with peptic ulcer and atrophic gastritis. 19448967 2009
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE IL1B-1464-G/C genotype was associated with lower incidence of AG in corpus of the stomach in Asians [odds ratio: 0.7 (95% confidence interval=0.5-0.8); P=0.02]. 20631624 2010
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease LHGDN Possible association of interleukin 1B C-31T polymorphism among Helicobacter pylori seropositive Japanese Brazilians with susceptibility to atrophic gastritis. 15289894 2004
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE Proinflammatory IL-1 polymorphisms (IL-1RN*2(+)/IL-1B-511T/-31C(+)) were associated with increased IL-1beta expression, more severe degrees of inflammation, and an increased prevalence of IM and AG. 15247172 2004
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.150 GeneticVariation disease BEFREE IL1RN*2 allele was not linked with AG or intestinal metaplasia in all parts of the stomach both among Asians and Caucasians. 20631624 2010
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.150 GeneticVariation disease BEFREE Moreover, the iceA2/IL-1B-511T and iceA2/IL-1B-31C/-511T/IL-1RN(*)2 bacteria/host genotype combinations showed a significant association with AG and L2/L3, respectively. 20482626 2010
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.150 GeneticVariation disease BEFREE The alleles IL-1β-31C and IL-1RN were associated with an increased risk of developing gastric carcinoma, and IL-1β-511T with an increased risk of developing chronic atrophic gastritis with no significant association of developing gastric carcinoma. 27340011 2016
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.150 GeneticVariation disease BEFREE Proinflammatory IL-1 polymorphisms (IL-1RN*2(+)/IL-1B-511T/-31C(+)) were associated with increased IL-1beta expression, more severe degrees of inflammation, and an increased prevalence of IM and AG. 15247172 2004
Entrez Id: 8000
Gene Symbol: PSCA
PSCA
0.120 GeneticVariation disease BEFREE The present GWAS revealed the genetic locus of PSCA as the most significant locus for the risk of HP-induced GA, which confirmed the recently reported association in Europeans. 30753327 2019
Entrez Id: 8000
Gene Symbol: PSCA
PSCA
0.120 GeneticVariation disease BEFREE PSCA rs2294008 C>T polymorphism was assessed in H. pylori-positive Japanese patients (n = 488) with noncardia gastric cancer (n = 193), gastric ulcer (n = 84), duodenal ulcer (n = 61), and atrophic gastritis (n = 150), as well as in H. pylori-negatives (n = 266). 25582162 2015
Entrez Id: 8000
Gene Symbol: PSCA
PSCA
0.120 GeneticVariation disease GWASCAT GWAS analysis reveals a significant contribution of PSCA to the risk of Heliobacter pylori-induced gastric atrophy. 30753327 2019
Entrez Id: 3845
Gene Symbol: KRAS
KRAS
0.110 GeneticVariation disease BEFREE Among those participants with atrophic gastritis without metaplasia, 19.4% (6 of 25) contained KRAS mutations, indicating that mutation of this important gene is likely an early event in the etiology of gastric carcinoma. 10067815 1999
Entrez Id: 5225
Gene Symbol: PGC
PGC
0.100 GeneticVariation disease BEFREE Participants with atrophic gastritis (PGI < 30 μg/L or a PGI: PGII < 3.0) had shorter LTL than did those without: mean difference - 0.18 (95% CI - 0.32, - 0.04). 31331390 2019
Entrez Id: 5225
Gene Symbol: PGC
PGC
0.100 GeneticVariation disease BEFREE Our findings highlight an important role of PGC rs3789210 and rs6939861 in altering susceptibility to atrophic gastritis and/or gastric cancer. 25551587 2014
Entrez Id: 5225
Gene Symbol: PGC
PGC
0.100 GeneticVariation disease BEFREE A three-dimensional interaction analysis found miR-4795 rs1002765, PGC rs9471643, and H. pylori infection positively interacted to increase AG risk (Pinteraction = 0.027). 26988755 2016
Entrez Id: 5225
Gene Symbol: PGC
PGC
0.100 GeneticVariation disease BEFREE PGC polymorphism with H. pylori infection increased risk of GU (OR 8.69; 95% CI 1.01-74.69), and AG (OR 11.12; 95% CI 1.37-90.84) or GC (OR 10.61; 95% CI 1.28-87.79) in a super-multiplicative manner. 19132389 2009
Entrez Id: 5225
Gene Symbol: PGC
PGC
0.100 GeneticVariation disease BEFREE We found 15 pairwise PGC-lncRNAs SNPs had interactions: Five pairs were associated with AG risk, and ten pairs were associated with GC risk. 30155999 2018
Entrez Id: 5225
Gene Symbol: PGC
PGC
0.100 GeneticVariation disease BEFREE In gastric cancerous specimens, we observed significantly higher messenger RNA level in the subjects carrying the PGC rs6458238 GA genotype than that in subjects with the common GG genotype. 23455381 2013
Entrez Id: 8629
Gene Symbol: JRK
JRK
0.100 GeneticVariation disease GWASCAT GWAS analysis reveals a significant contribution of PSCA to the risk of Heliobacter pylori-induced gastric atrophy. 30753327 2019
Entrez Id: 5225
Gene Symbol: PGC
PGC
0.100 GeneticVariation disease BEFREE An interaction effect of pri-let-7a-1 rs10739971 polymorphism with ERCC6 rs1917799 polymorphism was observed for the risk of gastric cancer (P interaction = 0.026); and interaction effects of pri-let-7a-1 rs10739971 polymorphism with PGC rs6458238 polymorphism (P interaction = 0.012) and PGC rs9471643 polymorphism (P interaction = 0.039) were observed for the risk of atrophic gastritis. 24586594 2014