Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE Proinflammatory IL-1beta polymorphisms are associated with hypochlorhydria and atrophic gastritis in Japan. 12105837 2002
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE We investigated the influence of bacterial virulence factors and host IL-1 polymorphisms on the development of histologic abnormalities in 210 Helicobacter pylori-infected patients with chronic gastritis. cagA(+)/vacAs1(+) H. pylori strains were associated with intestinal metaplasia (IM), atrophic gastritis (AG), and severe inflammation. 12854083 2003
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE The aim of this study was to evaluate the relationship between IL1B and IL1 receptor antagonist gene polymorphisms and the risk of multifocal atrophic gastritis in African Americans and Caucasians. 16405550 2006
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE The alleles IL-1β-31C and IL-1RN were associated with an increased risk of developing gastric carcinoma, and IL-1β-511T with an increased risk of developing chronic atrophic gastritis with no significant association of developing gastric carcinoma. 27340011 2016
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE Interleukin-1beta (IL-1beta) polymorphisms are associated with peptic ulcer and atrophic gastritis. 19448967 2009
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE IL1B-1464-G/C genotype was associated with lower incidence of AG in corpus of the stomach in Asians [odds ratio: 0.7 (95% confidence interval=0.5-0.8); P=0.02]. 20631624 2010
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 GeneticVariation disease BEFREE Proinflammatory IL-1 polymorphisms (IL-1RN*2(+)/IL-1B-511T/-31C(+)) were associated with increased IL-1beta expression, more severe degrees of inflammation, and an increased prevalence of IM and AG. 15247172 2004
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.490 AlteredExpression disease BEFREE Deficiency of claudin-18 causes paracellular H+ leakage, up-regulation of interleukin-1β, and atrophic gastritis in mice. 22079592 2012
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.150 GeneticVariation disease BEFREE IL1RN*2 allele was not linked with AG or intestinal metaplasia in all parts of the stomach both among Asians and Caucasians. 20631624 2010
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.150 Biomarker disease BEFREE The highest prevalence of severe gastric abnormalities was found in patients with both host and bacterial high-risk genotypes (cagA(+)/vacAs1(+)/IL-1B -511T/IL-1RN*2), with ORs of 24.8 (95% CI, 5.2-117.3) for severe lymphocytic infiltration, 9.5 (95% CI, 2.8-32.1) for severe granulocytic infiltration, 6.0 (95% CI, 2.4-15.5) for IM, and 2.4 (95% CI, 0.93-6.2) for AG. 12854083 2003
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.150 GeneticVariation disease BEFREE Moreover, the iceA2/IL-1B-511T and iceA2/IL-1B-31C/-511T/IL-1RN(*)2 bacteria/host genotype combinations showed a significant association with AG and L2/L3, respectively. 20482626 2010
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.150 GeneticVariation disease BEFREE The alleles IL-1β-31C and IL-1RN were associated with an increased risk of developing gastric carcinoma, and IL-1β-511T with an increased risk of developing chronic atrophic gastritis with no significant association of developing gastric carcinoma. 27340011 2016
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.150 GeneticVariation disease BEFREE Proinflammatory IL-1 polymorphisms (IL-1RN*2(+)/IL-1B-511T/-31C(+)) were associated with increased IL-1beta expression, more severe degrees of inflammation, and an increased prevalence of IM and AG. 15247172 2004
Entrez Id: 8000
Gene Symbol: PSCA
PSCA
0.120 GeneticVariation disease BEFREE The present GWAS revealed the genetic locus of PSCA as the most significant locus for the risk of HP-induced GA, which confirmed the recently reported association in Europeans. 30753327 2019
Entrez Id: 8000
Gene Symbol: PSCA
PSCA
0.120 GeneticVariation disease BEFREE PSCA rs2294008 C>T polymorphism was assessed in H. pylori-positive Japanese patients (n = 488) with noncardia gastric cancer (n = 193), gastric ulcer (n = 84), duodenal ulcer (n = 61), and atrophic gastritis (n = 150), as well as in H. pylori-negatives (n = 266). 25582162 2015
Entrez Id: 3845
Gene Symbol: KRAS
KRAS
0.110 GeneticVariation disease BEFREE Among those participants with atrophic gastritis without metaplasia, 19.4% (6 of 25) contained KRAS mutations, indicating that mutation of this important gene is likely an early event in the etiology of gastric carcinoma. 10067815 1999
Entrez Id: 999
Gene Symbol: CDH1
CDH1
0.110 PosttranslationalModification disease BEFREE Frequent hypermethylation including that of CDH1 in AM increased in the GC group compared to the AG group, and CDH1 methylation was an independent predictive marker of GC (OR: 8.50, 95% CI: 2.64-25.33, p = 0.0003). 29042646 2017
Entrez Id: 5225
Gene Symbol: PGC
PGC
0.100 GeneticVariation disease BEFREE Participants with atrophic gastritis (PGI < 30 μg/L or a PGI: PGII < 3.0) had shorter LTL than did those without: mean difference - 0.18 (95% CI - 0.32, - 0.04). 31331390 2019
Entrez Id: 2520
Gene Symbol: GAST
GAST
0.100 Biomarker disease BEFREE Systematic review with meta-analysis: diagnostic performance of the combination of pepsinogen, gastrin-17 and anti-Helicobacter pylori antibodies serum assays for the diagnosis of atrophic gastritis. 28782119 2017
Entrez Id: 5225
Gene Symbol: PGC
PGC
0.100 GeneticVariation disease BEFREE Our findings highlight an important role of PGC rs3789210 and rs6939861 in altering susceptibility to atrophic gastritis and/or gastric cancer. 25551587 2014
Entrez Id: 5225
Gene Symbol: PGC
PGC
0.100 GeneticVariation disease BEFREE A three-dimensional interaction analysis found miR-4795 rs1002765, PGC rs9471643, and H. pylori infection positively interacted to increase AG risk (Pinteraction = 0.027). 26988755 2016
Entrez Id: 5225
Gene Symbol: PGC
PGC
0.100 GeneticVariation disease BEFREE PGC polymorphism with H. pylori infection increased risk of GU (OR 8.69; 95% CI 1.01-74.69), and AG (OR 11.12; 95% CI 1.37-90.84) or GC (OR 10.61; 95% CI 1.28-87.79) in a super-multiplicative manner. 19132389 2009
Entrez Id: 2520
Gene Symbol: GAST
GAST
0.100 Biomarker disease BEFREE There are three conditions that are associated with hyperplastic changes in endocrine cells preceding GEP-NETs: autoimmune chronic atrophic gastritis or multiple endocrine neoplasia type 1 (MEN1) with gastric enterochromaffin-like (ECL) cell hyperplasia; MEN1 with gastrin and somatostatin cell hyperplasia in the duodenum and glucagon cell hyperplasia in the islets of the pancreas; and inflammatory bowel disease with endocrine cell hyperplasia in the colon. 18058264 2007
Entrez Id: 2520
Gene Symbol: GAST
GAST
0.100 AlteredExpression disease BEFREE The aim of this study was to investigate the effects of long-term PPIs use on the gastrin levels in patients with atrophic gastritis and to determine factors affecting hypergastrinemia in long-term users of PPIs. 29310112 2018
Entrez Id: 2520
Gene Symbol: GAST
GAST
0.100 AlteredExpression disease BEFREE The aim of the study was to estimate the value of detecting pepsinogen (PG) I, PGII, and gastrin-17 (G-17) levels in serum for chronic atrophic gastritis (CAG) screening and to determine the clinical applicability of combined measurement of serum G-17, pepsinogens (PGI, PGII) and PGI/PGII ratio (PGR) as a screening test for CAG. 31058531 2019