Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 11280
Gene Symbol: SCN11A
SCN11A
0.010 Biomarker group BEFREE <b>Methods and Findings:</b> We performed targeted exome sequencing and/or TaqMan genotyping to evaluate the Na<sub>v</sub>1.7, Na<sub>v</sub>1.8, and Na<sub>v</sub>1.9 genes (SCN9A, SCN10A and SCN11A) in 121 IBD patients (including 41 "hypoalgesic" IBD patients) and 86 healthy controls. 30538988 2018
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.600 GeneticVariation group BEFREE <b>Objective</b> To compare the risk of serious infections associated with use of systemic steroids, non-biologic agents, or tumor necrosis factor α (TNF) inhibitors in pregnancy.<b>Design</b> Observational cohort study.<b>Setting</b> Public (Medicaid, 2001-10) or private (Optum Clinformatics, 2004-15) health insurance programs in the US.<b>Participants</b> 4961 pregnant women treated with immunosuppressive drugs for rheumatoid arthritis, systemic lupus erythematosus, ankylosing spondylitis, psoriatic arthritis, or inflammatory bowel disease.<b>Exposure for observational studies</b> Exposure was classified into steroid, non-biologic, or TNF inhibitors on first filled prescription during pregnancy. 28264814 2017
Entrez Id: 27034
Gene Symbol: ACAD8
ACAD8
0.100 GeneticVariation group BEFREE <b>Purpose:</b> Inflammatory bowel disease-associated colorectal cancers (IBD-CRC) are associated with a higher mortality than sporadic colorectal cancers. 29950348 2018
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.600 Biomarker group BEFREE <b>Results:</b> Six (6) inflammatory biomarkers (serum amyloid A (SAA), Eotaxin-1, IL-6, IL-8, IL-17A, and TNF-α) showed better prediction of IBD disease activity than routine measures (CRP, fecal calprotectin and HBI/SCCAI scores). 31772929 2019
Entrez Id: 3576
Gene Symbol: CXCL8
CXCL8
0.100 Biomarker group BEFREE <i>Akkermansia muciniphila</i> is potential probiotic in that its type strain ATCC BAA-835 has beneficial effects upon obesity and diabetes.However, whether <i>A. muciniphila</i> can improve inflammatory bowel diseases (IBD), which is a form of chronic intestinal dysbiosis, is unknown.Hence, we used an isolated murine <i>A. muciniphila</i> strain (designated 139) and <i>A. muciniphila</i> type strain ATCC, to investigate their anti-inflammatory properties in cell models and in Dextran Sulfate Sodium (DSS)-induced chronic colitis of mice.<i>In vitro</i>, the two <i>A. muciniphila</i> strains exerted similar anti-inflammatory properties as they both reduced IL-8 production by TNF-α-stimulated HT-29 cells. 31334133 2019
Entrez Id: 3586
Gene Symbol: IL10
IL10
0.700 Biomarker group BEFREE <i>Bifico</i> is a probiotic mixture containing <i>Bifidobacterium</i>, <i>Lactobacillus acidophilus</i>, and <i>Enterococcus.</i> Studies support that <i>Bifico</i> has a protective effect in experimental colitis (IL-10-deficient and TNBS) models and in patients with inflammatory bowel disease (IBD). 29849501 2018
Entrez Id: 29126
Gene Symbol: CD274
CD274
0.030 Biomarker group BEFREE <i>Bifidobacterium infantis</i> Induces Protective Colonic PD-L1 and Foxp3 Regulatory T Cells in an Acute Murine Experimental Model of Inflammatory Bowel Disease. 30600673 2019
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.100 Biomarker group BEFREE <i>Bifidobacterium infantis</i> Induces Protective Colonic PD-L1 and Foxp3 Regulatory T Cells in an Acute Murine Experimental Model of Inflammatory Bowel Disease. 30600673 2019
Entrez Id: 3586
Gene Symbol: IL10
IL10
0.700 Biomarker group BEFREE <i>Enterococcus faecalis</i> is a resident member of the human intestinal core microbiota that has been linked to the pathogenesis of IBD and induces chronic colitis in susceptible monoassociated IL-10-deficient (IL-10<sup>-/-</sup>) mice. 31281321 2019
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.600 GeneticVariation group BEFREE <i>FCGR3A</i> V158F polymorphism seems to be associated with ADA production against mAbs and it could be taken into account when considering the dose and type of anti-TNF in IBD patients. 29333082 2018
Entrez Id: 4248
Gene Symbol: MGAT3
MGAT3
0.010 AlteredExpression group BEFREE <i>MGAT3</i> promoter methylation correlated significantly with galactosylation, sialylation, and bisecting GlcNAc on IgG of the same patients, suggesting that activity of the GnT-III enzyme, encoded by this gene, might be altered in IBD. 29991969 2018
Entrez Id: 2944
Gene Symbol: GSTM1
GSTM1
0.060 GeneticVariation group LHGDN 'Null' genotypes of GSTM1 and T1 are associated with IBD and the combination of the two GST genotypes further increases the risk, possibly due to gene-gene interaction. 17565649 2007
Entrez Id: 2944
Gene Symbol: GSTM1
GSTM1
0.060 GeneticVariation group BEFREE 'Null' genotypes of GSTM1 and T1 are associated with IBD and the combination of the two GST genotypes further increases the risk, possibly due to gene-gene interaction. 17565649 2007
Entrez Id: 133482
Gene Symbol: SLCO6A1
SLCO6A1
0.040 GeneticVariation group BEFREE 'Null' genotypes of GSTM1 and T1 are associated with IBD and the combination of the two GST genotypes further increases the risk, possibly due to gene-gene interaction. 17565649 2007
Entrez Id: 373156
Gene Symbol: GSTK1
GSTK1
0.040 GeneticVariation group BEFREE 'Null' genotypes of GSTM1 and T1 are associated with IBD and the combination of the two GST genotypes further increases the risk, possibly due to gene-gene interaction. 17565649 2007
Entrez Id: 64127
Gene Symbol: NOD2
NOD2
0.500 GeneticVariation group BEFREE (2) We genotyped 163 known IBD risk loci and sequenced NOD2 in 22 patients with FGDS. 30353760 2019
Entrez Id: 7494
Gene Symbol: XBP1
XBP1
0.270 Biomarker group BEFREE (2008) link a key mediator of endoplasmic reticulum stress, the protein XBP1, with survival of intestinal secretory epithelial cells and inflammatory bowel disease. 18775305 2008
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.100 AlteredExpression group BEFREE (3) We replicated a previous association of FOXP3, a transcription factor that regulates T-cell development and function, with vitiligo; and (4) we discovered that C1GALT1C1 exhibits sex-specific effect on disease risk in both IBDs. 25479423 2014
Entrez Id: 29071
Gene Symbol: C1GALT1C1
C1GALT1C1
0.010 Biomarker group BEFREE (3) We replicated a previous association of FOXP3, a transcription factor that regulates T-cell development and function, with vitiligo; and (4) we discovered that C1GALT1C1 exhibits sex-specific effect on disease risk in both IBDs. 25479423 2014
Entrez Id: 64127
Gene Symbol: NOD2
NOD2
0.500 GeneticVariation group LHGDN 1007fs, G908R, R702W mutations and P268S, IVS8+158 polymorphisms of CARD15 gene were analyzed in 130 inflammatory bowel disease patients (67 Crohn's disease, 63 ulcerative colitis) and 87 healthy controls. 17978873 2008
Entrez Id: 27034
Gene Symbol: ACAD8
ACAD8
0.100 GeneticVariation group BEFREE 197 patients with UC and 302 with CD (499 with inflammatory bowel disease (IBD] whose disease started before age 20 years and whose age at time of study was less than 25 years were investigated, with two age- and sex-matched controls for each patient. 3685876 1987
Entrez Id: 2346
Gene Symbol: FOLH1
FOLH1
0.040 Biomarker group BEFREE 2-(Phosphonomethyl)-pentanedioic acid (2-PMPA) is a potent (IC<sub>50</sub> = 300 pM) and selective inhibitor of glutamate carboxypeptidase II (GCPII) with efficacy in multiple neurological and psychiatric disease preclinical models and more recently in models of inflammatory bowel disease (IBD) and cancer. 31503493 2019
Entrez Id: 51561
Gene Symbol: IL23A
IL23A
0.100 Biomarker group LHGDN 3'UTR C2370A allele of the IL-23 receptor gene is associated with relapsing-remitting multiple sclerosis. 18180107 2008
Entrez Id: 410
Gene Symbol: ARSA
ARSA
0.100 Biomarker group BEFREE 5-ASA showed a chemopreventive effect against CRC/Dys in IBD patients (OR = 0.58, 95% CI: 0.45-0.75). 27906680 2017
Entrez Id: 410
Gene Symbol: ARSA
ARSA
0.100 GeneticVariation group BEFREE 5-ASA agents were used more commonly in the pediatric IBD population (96.9% vs. 79.9%; p = 0.0034) as compared to adults whereas corticosteroids (87.5% vs. 76.9%; p = 0.28) and infliximab (25% vs. 9.2%; p = 0.054) were used more frequently in the pediatric CD subgroup as compared to adult CD subgroup. 29572605 2018