Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 29128
Gene Symbol: UHRF1
UHRF1
0.010 AlteredExpression group BEFREE In conclusion, we identified that Uhrf1-mediated DNA methylation controls Tnf-α expression of macrophages in the experimental colitis resembling IBD. 31611260 2019
Entrez Id: 3855
Gene Symbol: KRT7
KRT7
0.010 Biomarker group BEFREE Sociodemographic and clinical data were collected, and validated questionnaires (Symptom Checklist-90-R [SCL-90-R]) for psychological distress, Defense Mechanism Inventory (DMI) for psychological defense mechanisms, and Inflammatory Bowel Disease Questionnaire (IBDQ) for quality of life (QoL) were administered. 30689871 2019
Entrez Id: 814
Gene Symbol: CAMK4
CAMK4
0.010 Biomarker group BEFREE Small molecules targeting CaMKIV activation may provide therapeutic benefit for patients with IBD.-Cunningham, K. E., Novak, E. A., Vincent, G., Siow, V. S., Griffith, B. D., Ranganathan, S., Rosengart, M. R., Piganelli, J. D., Mollen, K. P. Calcium/calmodulin-dependent protein kinase IV (CaMKIV) activation contributes to the pathogenesis of experimental colitis via inhibition of intestinal epithelial cell proliferation. 30113881 2019
Entrez Id: 79792
Gene Symbol: GSDMD
GSDMD
0.010 AlteredExpression group BEFREE NEK7 mRNA and protein expression and pyroptosis-associated factors, including Caspase-1 (p45, p20), NLRP3, and GSDMD, were upregulated in IBD tissues. 31787755 2019
Entrez Id: 5724
Gene Symbol: PTAFR
PTAFR
0.010 Biomarker group BEFREE We investigated the role of PAFR in pulmonary EIMs of IBD, using dextran sulfate sodium (DSS) and anti-CD40 murine models of colitis. 30976089 2019
Entrez Id: 840
Gene Symbol: CASP7
CASP7
0.010 Biomarker group BEFREE The caspase-3 and caspase-7 status was also assessed and correlated to miR-224 dysregulation. miR-224 was significantly upregulated during the adenoma-carcinoma sequence and in the context of inflammatory bowel disease dysplastic lesions, whereas its expression was significantly downregulated among BRAF-mutated tumors and in the presence of a DNA mismatch repair deficiency. miR-224 targets caspase-3 and caspase-7 in colorectal cancer, and this inverse relation was already evident from the earliest phases of transformation in intestinal mucosa. 30448733 2019
Entrez Id: 51621
Gene Symbol: KLF13
KLF13
0.010 Biomarker group BEFREE RNA-seq analysis of miR-125a<sup>-/-</sup> CD4<sup>+</sup> T cells revealed enhanced genes (e.g., Stat1, Stat3, RORγt, Irf4, Klf13) in T cell activation and effector pathways, while ETS-1 as its functional target promoted IBD CD4<sup>+</sup> T cell differentiation into Th1 cells. 31014918 2019
Entrez Id: 406910
Gene Symbol: MIR125A
MIR125A
0.010 Biomarker group BEFREE Thus, our data suggest that miR-125a protects intestinal mucosa from inflammatory injury and that ETS-1 as its target participates in the pathogenesis of IBD. 31014918 2019
Entrez Id: 4192
Gene Symbol: MDK
MDK
0.010 AlteredExpression group BEFREE Additionally, it has been shown that MK is overexpressed in two major clinically defined forms of inflammatory bowel diseases (IBD), Crohn's disease (CD) and ulcerative colitis (UC), which are classified as autoinflammatory diseases. 30217121 2019
Entrez Id: 11252
Gene Symbol: PACSIN2
PACSIN2
0.010 GeneticVariation group BEFREE The aim of the study was to validate the impact of the single-nucleotide polymorphism rs2413739 (T > C) in the PACSIN2 gene on thiopurines pharmacological parameters and clinical response in an Italian cohort of pediatric patients with acute lymphoblastic leukemia (ALL) and inflammatory bowel disease (IBD). 31792371 2019
Entrez Id: 3976
Gene Symbol: LIF
LIF
0.010 Biomarker group BEFREE Thus, LIF effectively inhibits Th17 accumulation and promotes repair of damaged intestinal epithelium in inflamed colon, serves as a potential therapy for IBD. 30770344 2019
Entrez Id: 1025
Gene Symbol: CDK9
CDK9
0.010 AlteredExpression group BEFREE TAK-828F strongly inhibited IL-17 gene expression with IC<sub>50</sub> values from 21.4 to 34.4 nmol/L in PBMCs from anti-TNF mAb naive and treatment-failure patients of IBD. 30972425 2019
Entrez Id: 6611
Gene Symbol: SMS
SMS
0.010 Biomarker group BEFREE In this study, patients attending 3 tertiary referral centers with worsening IBD symptoms in the previous 2 years were eligible for randomization to remote monitoring via SMS text messages (short message service, SMS) every other week, weekly, or standard care. 31162128 2019
Entrez Id: 406899
Gene Symbol: MIR106A
MIR106A
0.010 Biomarker group BEFREE Collectively, our data demonstrate impaired Treg suppressive function in a murine IBD model consistent with human disease and support the potential for inhibition of miR-106a as a future therapeutic approach to treat chronic inflammatory conditions including IBD. 30327532 2019
Entrez Id: 91807
Gene Symbol: MYLK3
MYLK3
0.010 AlteredExpression group BEFREE Furthermore, CCAT1-induced MLCK overexpression and IBD disease progression were significantly attenuated by miR-185-3p. 30615124 2019
Entrez Id: 23659
Gene Symbol: PLA2G15
PLA2G15
0.010 Biomarker group BEFREE Our aim was to employ the ACS-NSQIP to collect disease-specific variables relevant to surgical outcomes in IBD. 31622979 2019
Entrez Id: 5048
Gene Symbol: PAFAH1B1
PAFAH1B1
0.010 Biomarker group BEFREE I_MDS: an inflammatory bowel disease molecular activity score to classify patients with differing disease-driving pathways and therapeutic response to anti-TNF treatment. 31039157 2019
Entrez Id: 799
Gene Symbol: CALCR
CALCR
0.010 GeneticVariation group BEFREE We investigated the intestinal mucosa and the mesenteric adipose tissue (MAT) collected from CD patients with active disease (CD group) and from non-IBD patients (CTR group) to study ER stress activation and to address tissue-specific modulation in CD. 31557250 2019
Entrez Id: 5092
Gene Symbol: PCBD1
PCBD1
0.010 Biomarker group BEFREE Descriptive, retrospective study of patients with PCD who were treated in the Inflammatory Bowel Disease Unit. 29759924 2019
Entrez Id: 412
Gene Symbol: STS
STS
0.010 Biomarker group BEFREE Prevalence of inflammatory bowel disease was higher in ASC group (56% vs 10% in AIH, p < 0.05).On histology 17% had cirrhosis. 31069759 2019
Entrez Id: 29969
Gene Symbol: MDFIC
MDFIC
0.010 Biomarker group BEFREE Abbreviations: ADA: Adalimumab; CD: Crohn disease; ECCO: European Crohn's and Colitis Organisation; EEN: exclusive enteral nutrition; ESPGHAN: European Society for Paediatric Gastroenterology Hepatology and Nutrition; FMT: faecal microbiota transplantation; GDP: gross domestic product; HIC: high-income countries; IBD: inflammatory bowel disease; IBDU: inflammatory bowel disease unclassified; IC: ileocolonoscopy; IFX: infliximab; IPAA: ileal pouch anal anastomosis; LMIC: low- and middle-income countries; MH: mucosal healing; OGD: oesophago-gastroduodenoscopy; PCDAI: Paediatric Crohn's Disease Activity Index; PIBD: paediatric inflammatory bowel disease; PUCAI: Paediatric Ulcerative Colitis Activity Index; UC: ulcerative colitis; UGIT: upper gastrointestinal tract; VEO-IBD: very early-onset IBD; WLE: white light endoscopy; 5-ASA: 5 aminosalicylic acid; 6-MP: 6-mercaptopurine. 30900526 2019
Entrez Id: 55902
Gene Symbol: ACSS2
ACSS2
0.010 Biomarker group BEFREE Our aim was to employ the ACS-NSQIP to collect disease-specific variables relevant to surgical outcomes in IBD. 31622979 2019
Entrez Id: 94103
Gene Symbol: ORMDL3
ORMDL3
0.010 GeneticVariation group BEFREE Increased orosomucoid-like 3 (ORMDL3) expression levels, due to single nucleotide polymorphisms (SNPs), have been associated with several inflammatory diseases, including asthma and inflammatory bowel diseases. 30897694 2019
Entrez Id: 1767
Gene Symbol: DNAH5
DNAH5
0.010 Biomarker group BEFREE Descriptive, retrospective study of patients with PCD who were treated in the Inflammatory Bowel Disease Unit. 29759924 2019
Entrez Id: 6649
Gene Symbol: SOD3
SOD3
0.010 AlteredExpression group BEFREE Alterations in Cu,Zn-SOD (SOD1 and SOD3) activity and its expression have been observed in pathological occurrences most prevalent in modern society, including inflammatory bowel disease, obesity and its implications-diabetes and hypertension, and chronic obstructive pulmonary disease. 30316201 2019