Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 129521
Gene Symbol: NMS
NMS
0.010 Biomarker disease BEFREE <b>Abbreviations</b>: 5-HT: 5-hydroxytryptamine/serotonin; BDNF: brain-derived neurotrophic factor; CRF: corticotrophin-releasing factor; EC: enterochromaffin; ENS: enteric nervous system; GI: gastrointestinal; GPCR: G-protein-coupled receptor; IBS (-D): irritable bowel syndrome (diarrhea predominant); LRP5/6: low-density lipoprotein receptor-related protein 5/6; MAPK: mitogen-activated protein kinase; NGF: nerve growth factor; NMS: neonatal-maternal separation; PI3K: phosphoinositode3-kinase; PLCγ: phospholipase c, gamma subtype; TrkA: tropomyosin receptor kinase A. 31272268 2019
Entrez Id: 5294
Gene Symbol: PIK3CG
PIK3CG
0.010 Biomarker disease BEFREE <b>Abbreviations</b>: 5-HT: 5-hydroxytryptamine/serotonin; BDNF: brain-derived neurotrophic factor; CRF: corticotrophin-releasing factor; EC: enterochromaffin; ENS: enteric nervous system; GI: gastrointestinal; GPCR: G-protein-coupled receptor; IBS (-D): irritable bowel syndrome (diarrhea predominant); LRP5/6: low-density lipoprotein receptor-related protein 5/6; MAPK: mitogen-activated protein kinase; NGF: nerve growth factor; NMS: neonatal-maternal separation; PI3K: phosphoinositode3-kinase; PLCγ: phospholipase c, gamma subtype; TrkA: tropomyosin receptor kinase A. 31272268 2019
Entrez Id: 5293
Gene Symbol: PIK3CD
PIK3CD
0.010 Biomarker disease BEFREE <b>Abbreviations</b>: 5-HT: 5-hydroxytryptamine/serotonin; BDNF: brain-derived neurotrophic factor; CRF: corticotrophin-releasing factor; EC: enterochromaffin; ENS: enteric nervous system; GI: gastrointestinal; GPCR: G-protein-coupled receptor; IBS (-D): irritable bowel syndrome (diarrhea predominant); LRP5/6: low-density lipoprotein receptor-related protein 5/6; MAPK: mitogen-activated protein kinase; NGF: nerve growth factor; NMS: neonatal-maternal separation; PI3K: phosphoinositode3-kinase; PLCγ: phospholipase c, gamma subtype; TrkA: tropomyosin receptor kinase A. 31272268 2019
Entrez Id: 4041
Gene Symbol: LRP5
LRP5
0.010 GeneticVariation disease BEFREE <b>Abbreviations</b>: 5-HT: 5-hydroxytryptamine/serotonin; BDNF: brain-derived neurotrophic factor; CRF: corticotrophin-releasing factor; EC: enterochromaffin; ENS: enteric nervous system; GI: gastrointestinal; GPCR: G-protein-coupled receptor; IBS (-D): irritable bowel syndrome (diarrhea predominant); LRP5/6: low-density lipoprotein receptor-related protein 5/6; MAPK: mitogen-activated protein kinase; NGF: nerve growth factor; NMS: neonatal-maternal separation; PI3K: phosphoinositode3-kinase; PLCγ: phospholipase c, gamma subtype; TrkA: tropomyosin receptor kinase A. 31272268 2019
Entrez Id: 5291
Gene Symbol: PIK3CB
PIK3CB
0.010 Biomarker disease BEFREE <b>Abbreviations</b>: 5-HT: 5-hydroxytryptamine/serotonin; BDNF: brain-derived neurotrophic factor; CRF: corticotrophin-releasing factor; EC: enterochromaffin; ENS: enteric nervous system; GI: gastrointestinal; GPCR: G-protein-coupled receptor; IBS (-D): irritable bowel syndrome (diarrhea predominant); LRP5/6: low-density lipoprotein receptor-related protein 5/6; MAPK: mitogen-activated protein kinase; NGF: nerve growth factor; NMS: neonatal-maternal separation; PI3K: phosphoinositode3-kinase; PLCγ: phospholipase c, gamma subtype; TrkA: tropomyosin receptor kinase A. 31272268 2019
Entrez Id: 5290
Gene Symbol: PIK3CA
PIK3CA
0.010 Biomarker disease BEFREE <b>Abbreviations</b>: 5-HT: 5-hydroxytryptamine/serotonin; BDNF: brain-derived neurotrophic factor; CRF: corticotrophin-releasing factor; EC: enterochromaffin; ENS: enteric nervous system; GI: gastrointestinal; GPCR: G-protein-coupled receptor; IBS (-D): irritable bowel syndrome (diarrhea predominant); LRP5/6: low-density lipoprotein receptor-related protein 5/6; MAPK: mitogen-activated protein kinase; NGF: nerve growth factor; NMS: neonatal-maternal separation; PI3K: phosphoinositode3-kinase; PLCγ: phospholipase c, gamma subtype; TrkA: tropomyosin receptor kinase A. 31272268 2019
Entrez Id: 1033
Gene Symbol: CDKN3
CDKN3
0.010 GeneticVariation disease BEFREE <b>Abbreviations</b>: CBA: Controlled Before and After; GSD: Government Service Delivery; IWDSSD: International Drinking-Water, Supply and Sanitation Decade (IDWSSD); KAP: Knowledge, Attitudes and Practices; IBD: Irritable Bowel Diseases; MDG: Millennium Development Goals; NTD: Neglected Tropical Diseases; PSSD: Private Sector Service Delivery; SDG: Sustainable Development Goals; SSA: Sub Saharan Africa; SODIS: Solar Disinfection System; STH: Soil Transmitted Helminths; RCT: Randomised Control Trial; WASH: Water Sanitation and Hygiene; WHO: World Health Organization. 30545246 2019
Entrez Id: 9476
Gene Symbol: NAPSA
NAPSA
0.010 GeneticVariation disease BEFREE <b>Abbreviations</b>: CBA: Controlled Before and After; GSD: Government Service Delivery; IWDSSD: International Drinking-Water, Supply and Sanitation Decade (IDWSSD); KAP: Knowledge, Attitudes and Practices; IBD: Irritable Bowel Diseases; MDG: Millennium Development Goals; NTD: Neglected Tropical Diseases; PSSD: Private Sector Service Delivery; SDG: Sustainable Development Goals; SSA: Sub Saharan Africa; SODIS: Solar Disinfection System; STH: Soil Transmitted Helminths; RCT: Randomised Control Trial; WASH: Water Sanitation and Hygiene; WHO: World Health Organization. 30545246 2019
Entrez Id: 27034
Gene Symbol: ACAD8
ACAD8
0.100 AlteredExpression disease BEFREE <b>Abbreviations</b>: CBA: Controlled Before and After; GSD: Government Service Delivery; IWDSSD: International Drinking-Water, Supply and Sanitation Decade (IDWSSD); KAP: Knowledge, Attitudes and Practices; IBD: Irritable Bowel Diseases; MDG: Millennium Development Goals; NTD: Neglected Tropical Diseases; PSSD: Private Sector Service Delivery; SDG: Sustainable Development Goals; SSA: Sub Saharan Africa; SODIS: Solar Disinfection System; STH: Soil Transmitted Helminths; RCT: Randomised Control Trial; WASH: Water Sanitation and Hygiene; WHO: World Health Organization. 30545246 2019
Entrez Id: 246744
Gene Symbol: STH
STH
0.010 AlteredExpression disease BEFREE <b>Abbreviations</b>: CBA: Controlled Before and After; GSD: Government Service Delivery; IWDSSD: International Drinking-Water, Supply and Sanitation Decade (IDWSSD); KAP: Knowledge, Attitudes and Practices; IBD: Irritable Bowel Diseases; MDG: Millennium Development Goals; NTD: Neglected Tropical Diseases; PSSD: Private Sector Service Delivery; SDG: Sustainable Development Goals; SSA: Sub Saharan Africa; SODIS: Solar Disinfection System; STH: Soil Transmitted Helminths; RCT: Randomised Control Trial; WASH: Water Sanitation and Hygiene; WHO: World Health Organization. 30545246 2019
Entrez Id: 27034
Gene Symbol: ACAD8
ACAD8
0.100 GeneticVariation disease BEFREE <b>Conclusions:</b> The self-monitoring of IBD activity with a combination of a rapid fecal calprotectin home test and a symptom questionnaire provides an option for individualized care for IBD patients. 31264494 2019
Entrez Id: 54106
Gene Symbol: TLR9
TLR9
0.010 Biomarker disease BEFREE <i>Conclusion.</i> Upregulation of TLR4, TLR5, and TLR9 suggests the involvement of bacteria or dysregulation of the immune response to commensal flora in small bowel mucosa in IBS patients. 28246611 2017
Entrez Id: 7099
Gene Symbol: TLR4
TLR4
0.040 AlteredExpression disease BEFREE <i>Results.</i> We found increased mRNA expression of TLR4 (mean fold change 1.85 ± 0.31 versus 1.0 ± 0.20; <i>p</i> < 0.05), TLR5 (1.96 ± 0.36 versus 1.0 ± 0.20; <i>p</i> < 0.05) and TLR9 (2.00 ± 0.24 versus 1.0 ± 0.25; <i>p</i> < 0.01) but not of TLR2 in the small bowel mucosa from patients with IBS compared to the controls. 28246611 2017
Entrez Id: 7100
Gene Symbol: TLR5
TLR5
0.020 Biomarker disease BEFREE <i>Results.</i> We found increased mRNA expression of TLR4 (mean fold change 1.85 ± 0.31 versus 1.0 ± 0.20; <i>p</i> < 0.05), TLR5 (1.96 ± 0.36 versus 1.0 ± 0.20; <i>p</i> < 0.05) and TLR9 (2.00 ± 0.24 versus 1.0 ± 0.25; <i>p</i> < 0.01) but not of TLR2 in the small bowel mucosa from patients with IBS compared to the controls. 28246611 2017
Entrez Id: 7097
Gene Symbol: TLR2
TLR2
0.020 Biomarker disease BEFREE <i>Results.</i> We found increased mRNA expression of TLR4 (mean fold change 1.85 ± 0.31 versus 1.0 ± 0.20; <i>p</i> < 0.05), TLR5 (1.96 ± 0.36 versus 1.0 ± 0.20; <i>p</i> < 0.05) and TLR9 (2.00 ± 0.24 versus 1.0 ± 0.25; <i>p</i> < 0.01) but not of TLR2 in the small bowel mucosa from patients with IBS compared to the controls. 28246611 2017
Entrez Id: 144125
Gene Symbol: OR2AG1
OR2AG1
0.040 Biomarker disease BEFREE 5-HT3 receptors are known to be involved in mediation of nausea/emesis caused by chemo/radio-therapy and anaesthesia, and more recently have also been found to be involved in irritable bowel syndrome. 17052218 2006
Entrez Id: 3106
Gene Symbol: HLA-B
HLA-B
0.020 Biomarker disease BEFREE IBD-AS was associated only with HLA-B*27 and DRB1*0101. 10648455 2000
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.010 Biomarker disease BEFREE IBD-AS was associated only with HLA-B*27 and DRB1*0101. 10648455 2000
Entrez Id: 129831
Gene Symbol: RBM45
RBM45
0.010 Biomarker disease BEFREE IBD-AS was associated only with HLA-B*27 and DRB1*0101. 10648455 2000
Entrez Id: 6556
Gene Symbol: SLC11A1
SLC11A1
0.010 GeneticVariation disease BEFREE IBD subjects were re-categorized at the sub-disease phenotypic level to characterize possible SLC11A1 genotype-phenotype correlations. 15757519 2005
Entrez Id: 3938
Gene Symbol: LCT
LCT
0.020 GeneticVariation disease BEFREE IBS and healthy individuals were genotyped for the C/T_13910 and G/A_22018 polymorphisms nearby the lactase-phlorizin hydrolase gene. 17706627 2008
Entrez Id: 929
Gene Symbol: CD14
CD14
0.020 GeneticVariation disease BEFREE IBD appears to be associated with the CD14 c.1-260C>T promoter variant in Germans and Hungarians, but not with the TLR4 c.896A>G (p.D299G) variant. 18174680 2007
Entrez Id: 6548
Gene Symbol: SLC9A1
SLC9A1
0.010 Biomarker disease BEFREE IBD-associated diarrhea may be due to a coordinated downregulation of multiple Na(+) transporter and related regulatory proteins, including NHE1,3, Na(+)/K(+)-ATPase, and ENaC, as well as NHERF1,2, and ClC-5, all of which are involved directly or indirectly in intestinal Na(+) absorption. 18942765 2009
Entrez Id: 1184
Gene Symbol: CLCN5
CLCN5
0.010 AlteredExpression disease BEFREE IBD-associated diarrhea may be due to a coordinated downregulation of multiple Na(+) transporter and related regulatory proteins, including NHE1,3, Na(+)/K(+)-ATPase, and ENaC, as well as NHERF1,2, and ClC-5, all of which are involved directly or indirectly in intestinal Na(+) absorption. 18942765 2009
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.100 Biomarker disease BEFREE IBD PBMC produced more IL-6 with all the TLR agonists tested than controls. 19725895 2010