Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 6521
Gene Symbol: SLC4A1
SLC4A1
0.020 GeneticVariation disease BEFREE Nephrolithiasis was more common with SLC4A1 mutations (42% versus 21%). 30773598 2019
Entrez Id: 6524
Gene Symbol: SLC5A2
SLC5A2
0.010 Biomarker disease BEFREE Nephrolithiasis and sodium-glucose co-transporter-2 (SGLT-2) inhibitors: A meta-analysis of randomized controlled trials. 31401152 2019
Entrez Id: 1184
Gene Symbol: CLCN5
CLCN5
0.100 GeneticVariation disease BEFREE ClC-5 is a chloride channel whose gene mutations have been reported to be associated with X-linked nephrolithiasis (XRN), X-linked recessive hypophosphatemic rickets (XLRH), Dent disease, and idiopathic low-molecular-weight proteinuria (ILMWP) in Japanese children. 11261675 2001
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE VDR genotype determination may provide a tool to identify individuals who are at a risk for calcium nephrolithiasis. 12814692 2003
Entrez Id: 1184
Gene Symbol: CLCN5
CLCN5
0.100 GeneticVariation disease BEFREE ClC-5 mutations cause Dent's disease which is associated with low molecular weight proteinuria and kidney stones. 18853181 2009
Entrez Id: 9380
Gene Symbol: GRHPR
GRHPR
0.010 Biomarker disease BEFREE Primary hyperoxaluria type 2 should be considered in patients at adult stone clinics who have had a history of nephrolithiasis since childhood, especially in those with consanguineous parents. 19296982 2009
Entrez Id: 7032
Gene Symbol: TFF2
TFF2
0.010 Biomarker disease BEFREE TFF2 and probably also TFF3 are candidate biomarkers for nephrolithiasis and possibly other inflammatory conditions of the urinary tract. 20063012 2010
Entrez Id: 2147
Gene Symbol: F2
F2
0.030 GeneticVariation disease BEFREE Prothrombin haplotype associated with kidney stone disease in Northeastern Thai patients. 21067798 2011
Entrez Id: 999
Gene Symbol: CDH1
CDH1
0.020 GeneticVariation disease BEFREE E-cadherin gene 3'-UTR C/T polymorphism in Turkish patients with nephrolithiasis. 21161401 2011
Entrez Id: 846
Gene Symbol: CASR
CASR
0.200 Biomarker disease BEFREE Calcium-sensing receptor and calcium kidney stones. 22107799 2011
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.600 GeneticVariation disease BEFREE SPP1 polymorphisms were found to be associated with nephrolithiasis and it may be suggested that SPP1 gene polymorphism could be a useful marker for evaluation of the early genetic risk factor in childhood nephrolithiasis. 23235966 2012
Entrez Id: 1591
Gene Symbol: CYP24A1
CYP24A1
0.100 GeneticVariation disease BEFREE CYP24A1 mutations should be considered in the differential diagnosis of hypercalciuric nephrolithiasis, especially as many adults are now prescribed supplemental oral vitamin D. 23470222 2013
Entrez Id: 367
Gene Symbol: AR
AR
0.020 Biomarker disease BEFREE Androgen receptor enhances kidney stone-CaOx crystal formation via modulation of oxalate biosynthesis & oxidative stress. 24956378 2014
Entrez Id: 7369
Gene Symbol: UMOD
UMOD
0.100 Biomarker disease BEFREE UMOD has been linked to water/electrolyte balance and to kidney innate immunity and it is believed to protect against urinary tract infections and renal stones. 25228753 2015
Entrez Id: 353
Gene Symbol: APRT
APRT
0.070 Biomarker disease BEFREE Adenine phosphoribosyltransferase (APRT) deficiency is a rare, but significant, cause of kidney stones and progressive chronic kidney disease. 29241594 2018
Entrez Id: 28996
Gene Symbol: HIPK2
HIPK2
0.010 GeneticVariation disease BEFREE HIPK2 polymorphisms rs2058265, rs6464214, and rs7456421 were associated with kidney stone disease in Chinese males not females. 29428801 2018
Entrez Id: 790
Gene Symbol: CAD
CAD
0.010 Biomarker disease BEFREE CAD manual segmentation allowed tissue layers and/or kidney stones to be made colorful and semi-transparent, allowing easier navigation through abnormal vasculature. 29546508 2018
Entrez Id: 353
Gene Symbol: APRT
APRT
0.070 GeneticVariation disease BEFREE Adenine phosphoribosyltransferase (APRT) deficiency (OMIM #614723) is a rare autosomal recessive defect in the purine salvage pathway that causes excessive production of 2,8-dihydroxyadenine, leading to nephrolithiasis and chronic kidney disease (CKD). 30106368 2018
Entrez Id: 5468
Gene Symbol: PPARG
PPARG
0.010 Biomarker disease BEFREE Peroxisome proliferator-activated receptor γ (PPARγ) has been shown to be critical for the regulation of cell transdifferentiation in many physiological and pathological conditions; however, little is known about its role in kidney stone formation. 30317563 2019
Entrez Id: 353
Gene Symbol: APRT
APRT
0.070 Biomarker disease BEFREE Adenine phosphoribosyltransferase (APRT) deficiency is a rare autosomal recessive disorder which leads to accumulation of poorly soluble 2,8-dihydroxyadenine in kidneys resulting in nephrolithiasis as well as chronic kidney disease from crystal nephropathy. 30355577 2018
Entrez Id: 353
Gene Symbol: APRT
APRT
0.070 Biomarker disease BEFREE Adenine phosphoribosyltransferase (APRT) deficiency is a hereditary purine metabolism disorder that causes kidney stones and chronic kidney disease (CKD). 30443743 2019
Entrez Id: 7177
Gene Symbol: TPSAB1
TPSAB1
0.010 AlteredExpression disease BEFREE TPS2, with moderate Mw, showed the strongest antioxidant activity and repair effect; it may become a potential drug for prevention and treatment of kidney stones. 30584463 2018
Entrez Id: 64499
Gene Symbol: TPSB2
TPSB2
0.010 AlteredExpression disease BEFREE TPS2, with moderate Mw, showed the strongest antioxidant activity and repair effect; it may become a potential drug for prevention and treatment of kidney stones. 30584463 2018
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 Biomarker disease BEFREE VDR BsmI, FokI, and ApaI gene polymorphisms were not associated with the risk of nephrolithiasis either in Asian and Caucasians populations, but VDR TaqI gene polymorphism was associated with nephrolithiasis in the Asian subjects. 30701705 2019
Entrez Id: 7369
Gene Symbol: UMOD
UMOD
0.100 Biomarker disease BEFREE UMOD has multiple functions such as protection against urinary tract infections and nephrolithiasis. 31205055 2019