Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 9429
Gene Symbol: ABCG2
ABCG2
0.010 GeneticVariation disease BEFREE ABCG2 SNP rs2231142 and the gout comorbidities including nephrolithiasis and CKD were associated (<i>P</i> = 0.014 and <i>P</i> = 0.026). 31367212 2019
Entrez Id: 2944
Gene Symbol: GSTM1
GSTM1
0.010 GeneticVariation disease BEFREE GSTM1 and GSTT1 null genotypes are not a risk features for nephrolithiasis. 31445152 2019
Entrez Id: 7369
Gene Symbol: UMOD
UMOD
0.100 Biomarker disease BEFREE Uromodulin is known to affect the formation of calcium-containing kidney stones, and this localization of UMOD will help in studies of families with autosomal forms of nephrolithiasis. 8179291 1993
Entrez Id: 353
Gene Symbol: APRT
APRT
0.070 Biomarker disease BEFREE Adenine phosphoribosyltransferase-deficient mice develop 2,8-dihydroxyadenine nephrolithiasis. 8643571 1996
Entrez Id: 1184
Gene Symbol: CLCN5
CLCN5
0.100 GeneticVariation disease BEFREE CLCN5 chloride-channel mutations in six new North American families with X-linked nephrolithiasis. 9734595 1998
Entrez Id: 133522
Gene Symbol: PPARGC1B
PPARGC1B
0.010 GeneticVariation disease BEFREE A comparison of micro-PERC and retrograde intrarenal surgery results in pediatric patients with renal stones. 28679474 2017
Entrez Id: 2316
Gene Symbol: FLNA
FLNA
0.010 GeneticVariation disease BEFREE A distinct X-linked syndrome involving joint contractures, keloids, large optic cup-to-disc ratio, and renal stones results from a filamin A (FLNA) mutation. 26804200 2016
Entrez Id: 846
Gene Symbol: CASR
CASR
0.200 GeneticVariation disease BEFREE A genetic polymorphism (rs17251221) in the calcium-sensing receptor gene (CASR) is associated with stone multiplicity in calcium nephrolithiasis. 21966463 2011
Entrez Id: 2335
Gene Symbol: FN1
FN1
0.020 GeneticVariation disease BEFREE A HindIII polymorphism of fibronectin gene is associated with nephrolithiasis. 19616291 2009
Entrez Id: 23562
Gene Symbol: CLDN14
CLDN14
0.500 Biomarker disease BEFREE A recent genome-wide association study has identified claudin-14 as a major risk gene of hypercalciuric nephrolithiasis. 27191348 2016
Entrez Id: 54822
Gene Symbol: TRPM7
TRPM7
0.300 Biomarker disease CTD_human Abnormal differentiation of dopaminergic neurons in zebrafish trpm7 mutant larvae impairs development of the motor pattern. 24291744 2014
Entrez Id: 9213
Gene Symbol: XPR1
XPR1
0.010 AlteredExpression disease BEFREE Activation of liver X receptor suppresses osteopontin expression and ameliorates nephrolithiasis. 30623435 2019
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.600 AlteredExpression disease BEFREE Activation of liver X receptor suppresses osteopontin expression and ameliorates nephrolithiasis. 30623435 2019
Entrez Id: 353
Gene Symbol: APRT
APRT
0.070 Biomarker disease BEFREE Adenine phosphoribosyltransferase (APRT) deficiency is a rare autosomal recessive disorder characterized by 2,8-dihydroxyadenine (2,8-DHA) crystalluria that can cause nephrolithiasis and chronic kidney disease. 22212387 2012
Entrez Id: 353
Gene Symbol: APRT
APRT
0.070 GeneticVariation disease BEFREE Adenine phosphoribosyltransferase (APRT) deficiency is a rare autosomal recessive disorder of adenine metabolism that results in excessive urinary excretion of the poorly soluble 2,8-dihydroxyadenine (DHA), leading to kidney stones and chronic kidney disease. 31378568 2020
Entrez Id: 9771
Gene Symbol: RAPGEF5
RAPGEF5
0.020 Biomarker disease BEFREE All three groups had similar rates of nephrolithiasis (p = 0.10), osteoporosis (p = 0.82), and reduced GFR (p = 0.06). 30262120 2019
Entrez Id: 10686
Gene Symbol: CLDN16
CLDN16
0.040 GeneticVariation disease BEFREE Alterations to claudins expressed in the TAL tight junction greatly affects calcium homeostasis as highlighted by point mutations in claudin-16 or claudin-19 causing FHHNC or gain of function mutations in claudin-14 causing kidney stones. 29782346 2018
Entrez Id: 149461
Gene Symbol: CLDN19
CLDN19
0.010 GeneticVariation disease BEFREE Alterations to claudins expressed in the TAL tight junction greatly affects calcium homeostasis as highlighted by point mutations in claudin-16 or claudin-19 causing FHHNC or gain of function mutations in claudin-14 causing kidney stones. 29782346 2018
Entrez Id: 55604
Gene Symbol: CARMIL1
CARMIL1
0.010 GeneticVariation disease BEFREE Among the loci that showed association in this study, we observed evidence of a possible involvement of the region encompassing the gene LRRC16A, already associated to serum uric acid levels in a large meta-analysis of 14 GWAS, suggesting that this locus might lead a pathway for uric acid metabolism that may be involved in gout as well as in nephrolithiasis. 21283782 2011
Entrez Id: 495
Gene Symbol: ATP4A
ATP4A
0.020 Biomarker disease BEFREE Analysis of postmarketing safety data for proton-pump inhibitors reveals increased propensity for renal injury, electrolyte abnormalities, and nephrolithiasis. 30783195 2019
Entrez Id: 479
Gene Symbol: ATP12A
ATP12A
0.020 Biomarker disease BEFREE Analysis of postmarketing safety data for proton-pump inhibitors reveals increased propensity for renal injury, electrolyte abnormalities, and nephrolithiasis. 30783195 2019
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.600 Biomarker disease LHGDN Apatite plaque particles in inner medulla of kidneys of calcium oxalate stone formers: osteopontin localization. 15954903 2005
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE Association between vitamin D receptor gene polymorphisms and tubular citrate handling in calcium nephrolithiasis. 12542560 2003
Entrez Id: 690
Gene Symbol: BTF3P11
BTF3P11
0.010 Biomarker disease BEFREE Association between low bone mass and the serum RANKL and OPG in patients with nephrolithiasis. 29996796 2018
Entrez Id: 799
Gene Symbol: CALCR
CALCR
0.020 GeneticVariation disease BEFREE Association of calcitonin receptor gene (CALCR) polymorphism with kidney stone disease in the population of West Bengal, India. 28435134 2017