Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1536
Gene Symbol: CYBB
CYBB
0.430 GeneticVariation disease BEFREE Though recent reports suggest that neutrophil extracellular traps (NETs) are a source of antigenic nucleic acids in systemic lupus erythematosus (SLE), we recently showed that inhibition of NETs by targeting the NADPH oxidase complex via cytochrome b-245, β polypeptide (cybb) deletion exacerbated disease in the MRL.Faslpr lupus mouse model. 28515361 2017
Entrez Id: 717
Gene Symbol: C2
C2
0.320 GeneticVariation disease BEFREE C3 metabolism in a patient with deficiency of the second component of complement (C2) and discoid lupus erythematosus. 1084239 1976
Entrez Id: 717
Gene Symbol: C2
C2
0.320 GeneticVariation disease BEFREE Hereditary complement (C2) deficiency with discoid lupus erythematosus and idiopathic atrophoderma. 315933 1979
Entrez Id: 1380
Gene Symbol: CR2
CR2
0.320 GeneticVariation disease BEFREE Single-nucleotide polymorphism 1 (rs3813946), located in the 5' untranslated region of the CR2 gene, altered transcriptional activity, suggesting a potential mechanism by which CR2 could contribute to the development of lupus. 17360460 2007
Entrez Id: 1380
Gene Symbol: CR2
CR2
0.320 GeneticVariation disease BEFREE These data confirm the effects of rs3813946 on CR2 transcription, identifying the 5' UTR to be a novel regulatory element for the CR2 gene in which variation may alter gene function and modify the development of lupus. 22673213 2012
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.150 GeneticVariation disease BEFREE We examined a polymorphism of osteopontin for an association with lupus in humans in an effort to determine whether there is any evidence that a genetic predisposition to altered osteopontin expression might explain the overexpression seen in human SLE patients. 11933203 2002
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.140 GeneticVariation disease BEFREE Cutting edge: autoimmune disease risk variant of STAT4 confers increased sensitivity to IFN-alpha in lupus patients in vivo. 19109131 2009
Entrez Id: 712
Gene Symbol: C1QA
C1QA
0.140 GeneticVariation disease BEFREE The identification of new mutation in C1qA gene that disrupts the start codon (ATG to AGG (Met1Arg)) has not been reported previously and it expands the knowledge and importance of the C1q gene in the pathogenesis of lupus especially in the high-risk African-American population. 22472776 2012
Entrez Id: 712
Gene Symbol: C1QA
C1QA
0.140 GeneticVariation disease BEFREE Polymorphisms of the C1qA gene are associated with low serum C1q levels in patients with cutaneous LE, but C1q polymorphisms have not been studied in patients with systemic lupus. 18504288 2009
Entrez Id: 712
Gene Symbol: C1QA
C1QA
0.140 GeneticVariation disease BEFREE The C1qA polymorphism associated with decreased distant metastasis has also been correlated with an increased incidence of subcutaneous systemic lupus and C1q deficiencies, suggesting that an altered immune response may play a role in the observed association. 16465510 2006
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.140 GeneticVariation disease BEFREE Altogether, we present a plausible molecular mechanism for increased lupus risk at the STAT1-STAT4 locus in which the risk allele of rs11889341, the most probable causal variant, leads to elevated STAT1 expression in B cells due to decreased repressor activity mediated by increased binding of HMGA1. 29912393 2018
Entrez Id: 3654
Gene Symbol: IRAK1
IRAK1
0.130 GeneticVariation disease BEFREE Our data suggest that the lupus-associated variant in the MECP2/IRAK1 locus has the potential to affect all 3 epigenetic mechanisms: DNA methylation, microRNA expression, and histone modification. 23428850 2013
Entrez Id: 4688
Gene Symbol: NCF2
NCF2
0.120 GeneticVariation disease BEFREE Lupus-associated causal mutation in neutrophil cytosolic factor 2 (NCF2) brings unique insights to the structure and function of NADPH oxidase. 22203994 2012
Entrez Id: 59067
Gene Symbol: IL21
IL21
0.100 GeneticVariation disease BEFREE Enhanced ABC formation in SWEF-deficient mice was controlled by the cytokine IL-21 and IRF5, whose variants are strongly associated with lupus. 29483597 2018
Entrez Id: 3663
Gene Symbol: IRF5
IRF5
0.100 GeneticVariation disease BEFREE Association of interferon regulatory factor 5 (IRF5) markers with an increased risk of lupus and overlapping autoimmunity in a Kuwaiti population. 24697591 2015
Entrez Id: 3447
Gene Symbol: IFNA13
IFNA13
0.100 GeneticVariation disease BEFREE Three functional variants of IFN regulatory factor 5 (IRF5) define risk and protective haplotypes for human lupus. 17412832 2007
Entrez Id: 3663
Gene Symbol: IRF5
IRF5
0.100 GeneticVariation disease BEFREE Enhanced ABC formation in SWEF-deficient mice was controlled by the cytokine IL-21 and IRF5, whose variants are strongly associated with lupus. 29483597 2018
Entrez Id: 3663
Gene Symbol: IRF5
IRF5
0.100 GeneticVariation disease BEFREE Three functional variants of IFN regulatory factor 5 (IRF5) define risk and protective haplotypes for human lupus. 17412832 2007
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.100 GeneticVariation disease BEFREE Genetic polymorphisms of interleukin 6 and interleukin 10 in Egyptian patients with systemic lupus eythematosus. 26568585 2016
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.100 GeneticVariation disease BEFREE The PTPN22 C1858T polymorphism is associated with skewing of cytokine profiles toward high interferon-alpha activity and low tumor necrosis factor alpha levels in patients with lupus. 18759295 2008
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.100 GeneticVariation disease BEFREE The aim of this study is to investigate whether the IL-6 -174 G/C polymorphism associates with lupus susceptibility or affects disease characteristics in Portuguese patients with SLE. 21153673 2011
Entrez Id: 2213
Gene Symbol: FCGR2B
FCGR2B
0.100 GeneticVariation disease BEFREE Given that the murine lupus susceptibility locus Nba2 includes the IFN-regulated genes Ifi202 (encoding for the p202 protein), Aim2 (encoding for the Aim2 protein), and Fcgr2b (encoding for the FcγRIIB receptor), we investigated whether the IRF5/Blimp-1 axis could regulate the expression of these genes. 22116829 2012
Entrez Id: 2213
Gene Symbol: FCGR2B
FCGR2B
0.100 GeneticVariation disease BEFREE Combined analysis of 4 groups of Asian patients strongly supported the association of the FCGR2B Thr187 allele with the lupus phenotype (P = 0.000159). 17133600 2006
Entrez Id: 3663
Gene Symbol: IRF5
IRF5
0.100 GeneticVariation disease BEFREE A meta-analysis of the genetic association of the 16 SNPs across populations showed that TNFSF4, STAT4, ITGAM, and IRF5 were associated with lupus in a Hispanic Mestizo cohort enriched for European and Amerindian ancestry. 20848568 2010
Entrez Id: 3439
Gene Symbol: IFNA1
IFNA1
0.100 GeneticVariation disease BEFREE Increased production and/or bioavailability of IFN-α and associated alterations in dendritic cell (DC) homeostasis have been linked to lupus pathogenesis. 21389264 2011