Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1536
Gene Symbol: CYBB
CYBB
0.430 GeneticVariation disease BEFREE Though recent reports suggest that neutrophil extracellular traps (NETs) are a source of antigenic nucleic acids in systemic lupus erythematosus (SLE), we recently showed that inhibition of NETs by targeting the NADPH oxidase complex via cytochrome b-245, β polypeptide (cybb) deletion exacerbated disease in the MRL.Faslpr lupus mouse model. 28515361 2017
Entrez Id: 1536
Gene Symbol: CYBB
CYBB
0.430 Biomarker disease BEFREE We found that NCF1 and NADPH oxidase 2 (NOX2) complex-derived ROS is an important regulator of several chronic inflammatory disorders by using models for rheumatoid arthritis, multiple sclerosis, psoriasis and psoriasis arthritis, gout, and lupus. 26683156 2016
Entrez Id: 1536
Gene Symbol: CYBB
CYBB
0.430 Biomarker disease BEFREE Here we aimed to shed light on the role of the NOX2 complex in handling of secondary necrotic cells (SNECs) and associated consequences for inflammation and autoimmunity during lupus. 31349119 2019
Entrez Id: 717
Gene Symbol: C2
C2
0.320 GeneticVariation disease BEFREE C3 metabolism in a patient with deficiency of the second component of complement (C2) and discoid lupus erythematosus. 1084239 1976
Entrez Id: 717
Gene Symbol: C2
C2
0.320 GeneticVariation disease BEFREE Hereditary complement (C2) deficiency with discoid lupus erythematosus and idiopathic atrophoderma. 315933 1979
Entrez Id: 1380
Gene Symbol: CR2
CR2
0.320 GeneticVariation disease BEFREE Single-nucleotide polymorphism 1 (rs3813946), located in the 5' untranslated region of the CR2 gene, altered transcriptional activity, suggesting a potential mechanism by which CR2 could contribute to the development of lupus. 17360460 2007
Entrez Id: 1380
Gene Symbol: CR2
CR2
0.320 GeneticVariation disease BEFREE These data confirm the effects of rs3813946 on CR2 transcription, identifying the 5' UTR to be a novel regulatory element for the CR2 gene in which variation may alter gene function and modify the development of lupus. 22673213 2012
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.150 GeneticVariation disease BEFREE We examined a polymorphism of osteopontin for an association with lupus in humans in an effort to determine whether there is any evidence that a genetic predisposition to altered osteopontin expression might explain the overexpression seen in human SLE patients. 11933203 2002
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.150 Biomarker disease BEFREE OPN production has been associated with several pathological conditions, including autoimmune diseases (e.g. lupus, multiple sclerosis and rheumatoid arthritis) and cancer. 31126876 2019
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.150 AlteredExpression disease BEFREE Glomerular expression of osteopontin in biopsies of human crescentic glomerulonephritis (N = 25), IgA nephropathy with crescents (N = 2), and diffuse proliferative lupus glomerulonephropathy with crescents (N = 1) was studied by immunohistochemistry, in situ hybridization, and combined immunohistochemistry/in situ hybridization. 10620192 2000
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.150 Biomarker disease BEFREE We further detected five distinct inflammatory and metabolic pathways such as TWEAK, osteopontin, endochondral ossification, fluropyrimidine activity and urea cycle and metabolism of amino groups that significantly contribute to the pathogenesis of lupus (P < 0.05). 26403095 2016
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.150 Biomarker disease BEFREE OPN has been implicated in the development of murine model of lupus and in humans with SLE. 24917428 2014
Entrez Id: 712
Gene Symbol: C1QA
C1QA
0.140 Biomarker disease BEFREE The C1QA gene is associated with subphenotypes of lupus in the African-American and Hispanic subjects. 19440201 2009
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.140 GeneticVariation disease BEFREE Cutting edge: autoimmune disease risk variant of STAT4 confers increased sensitivity to IFN-alpha in lupus patients in vivo. 19109131 2009
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.140 Biomarker disease BEFREE Further, we confirmed the genetic association between lupus and 5 additional lupus susceptibility loci (ITGAM, MSH5, CFB, STAT4, and FCGR2A; P = 7.5 × 10⁻¹¹, P = 5.2 × 10⁻⁸, P = 8.7 × 10⁻⁷ , P = 0.0058, and P = 0.0070, respectively), and provided evidence, for the first time, of genome-wide significance for the association between lupus in African American patients and ITGAM and MSH5 (HLA region). 21792837 2011
Entrez Id: 712
Gene Symbol: C1QA
C1QA
0.140 GeneticVariation disease BEFREE The identification of new mutation in C1qA gene that disrupts the start codon (ATG to AGG (Met1Arg)) has not been reported previously and it expands the knowledge and importance of the C1q gene in the pathogenesis of lupus especially in the high-risk African-American population. 22472776 2012
Entrez Id: 712
Gene Symbol: C1QA
C1QA
0.140 GeneticVariation disease BEFREE Polymorphisms of the C1qA gene are associated with low serum C1q levels in patients with cutaneous LE, but C1q polymorphisms have not been studied in patients with systemic lupus. 18504288 2009
Entrez Id: 712
Gene Symbol: C1QA
C1QA
0.140 GeneticVariation disease BEFREE The C1qA polymorphism associated with decreased distant metastasis has also been correlated with an increased incidence of subcutaneous systemic lupus and C1q deficiencies, suggesting that an altered immune response may play a role in the observed association. 16465510 2006
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.140 GeneticVariation disease BEFREE Altogether, we present a plausible molecular mechanism for increased lupus risk at the STAT1-STAT4 locus in which the risk allele of rs11889341, the most probable causal variant, leads to elevated STAT1 expression in B cells due to decreased repressor activity mediated by increased binding of HMGA1. 29912393 2018
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.140 Biomarker disease BEFREE A redundant epistatic interaction between IRF5 and STAT4 of the type I interferon pathway in susceptibility to lupus and rheumatoid arthritis. 24014567 2013
Entrez Id: 3654
Gene Symbol: IRAK1
IRAK1
0.130 AlteredExpression disease BEFREE Lupus development in BXSB mice expressing the Y chromosome autoimmunity accelerator (Yaa) increased basal and Toll-like receptor (TLR) 4/7-induced phosphorylation of mitogen-activated protein kinases, p65 nuclear factor-κB (NF-κB), enhanced tumor necrosis factor (TNF)-α and C-C motif chemokine ligand (CCL) 5 gene expression in splenic macrophages, but decreased levels of Toll-interacting protein and IRAK-M, without affecting IRAK4 or IRAK1 expression. 28295231 2017
Entrez Id: 3654
Gene Symbol: IRAK1
IRAK1
0.130 Biomarker disease BEFREE In vitro experiments showed that lupus CD4<sup>+</sup> T cells had more pronounced IRAK1 phosphorylation at threonine-209 upon IL-1β stimulation than did control cells. 29611775 2018
Entrez Id: 3654
Gene Symbol: IRAK1
IRAK1
0.130 GeneticVariation disease BEFREE Our data suggest that the lupus-associated variant in the MECP2/IRAK1 locus has the potential to affect all 3 epigenetic mechanisms: DNA methylation, microRNA expression, and histone modification. 23428850 2013
Entrez Id: 4688
Gene Symbol: NCF2
NCF2
0.120 Biomarker disease BEFREE Just as patients with chronic granulomatous disease who lack NADPH oxidase rarely develop SLE, NCF-2-null mice on a nonautoimmune background were susceptible to a chronic granulomatous disease-like opportunistic infection but did not develop lupus. 28471497 2017
Entrez Id: 4688
Gene Symbol: NCF2
NCF2
0.120 GeneticVariation disease BEFREE Lupus-associated causal mutation in neutrophil cytosolic factor 2 (NCF2) brings unique insights to the structure and function of NADPH oxidase. 22203994 2012