Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5229
Gene Symbol: PGGT1B
PGGT1B
0.010 Biomarker disease BEFREE The protein geranylgeranyltransferase Pggt1b is up-regulated in single-positive thymocytes, and loss of Pggt1b leads to marked defects in thymocyte egress and T cell lymphopenia in peripheral lymphoid organs in vivo. 31722972 2020
Entrez Id: 344167
Gene Symbol: FOXI3
FOXI3
0.010 Biomarker disease BEFREE Five kindreds with similar immunophenotypes that included selective T-cell lymphopenia had overlapping microdeletions at chromosome 2p11.2 that spanned FOXI3 and, in most cases, the immunoglobulin kappa light chain locus. 31600545 2020
Entrez Id: 5424
Gene Symbol: POLD1
POLD1
0.010 GeneticVariation disease BEFREE We identified a missense mutation (c. 3178C>T; p.R1060C) in POLD1 in 3 related subjects who presented with recurrent, especially herpetic, infections and T-cell lymphopenia with impaired T-cell but not B-cell proliferation. 31629014 2020
Entrez Id: 718
Gene Symbol: C3
C3
0.010 AlteredExpression disease BEFREE The presence of albuminuria, lymphopenia and low complement C3 levels were independent prognostic predictors of short-term mortality in SLE patients with PI. 30968568 2019
Entrez Id: 57217
Gene Symbol: TTC7A
TTC7A
0.010 GeneticVariation disease BEFREE Mutations in the tetratricopeptide repeat domain 7A (TTC7A) gene cause very early onset inflammatory bowel diseases (VOIBD) or multiple intestinal atresia associated with immune deficiency of various severities, ranging from combined immune deficiency to mild lymphopenia. 31787977 2019
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.010 Biomarker disease BEFREE The multivariate analysis showed that age, resection margins, human epidermal growth factor receptor, and lymphopenia were significant predictors of IBTR. 31366546 2019
Entrez Id: 64221
Gene Symbol: ROBO3
ROBO3
0.010 Biomarker disease BEFREE The RIG-I pathway is involved in peripheral T cell lymphopenia in patients with dermatomyositis. 31142372 2019
Entrez Id: 590
Gene Symbol: BCHE
BCHE
0.010 Biomarker disease BEFREE Grade 1-2 adverse events occurred in 12 patients and included mild transient stomatitis (2 cases), worsening of infantile acne (1 case), increases of serum cholesterol and triglycerides (4 cases), changes in serum phosphate levels (2 cases), increase of cholinesterase (2 cases), transient neutropenia (2 cases), transient anemia (1 case), transient lymphopenia (1 case) and recurrent infections (7 cases). 31053163 2019
Entrez Id: 9557
Gene Symbol: CHD1L
CHD1L
0.010 Biomarker disease BEFREE The 102 patients with ALC1 ≤1,479 cells/μl (defined as lymphopenia) had significantly higher 10-year IBTR rate than the 102 patients with ALC1 >1,479 cells/μl (16.2% vs. 1%, p=0.0034). 31366546 2019
Entrez Id: 10038
Gene Symbol: PARP2
PARP2
0.010 Biomarker disease BEFREE In dually PARP-1 and PARP-2-deficient mice, B-cell lymphopenia was associated with increased DNA damage and accentuated death in actively proliferating B-cells. 30996287 2019
Entrez Id: 8540
Gene Symbol: AGPS
AGPS
0.010 GeneticVariation disease BEFREE This study reports on a novel activating p110δ mutation causing adult-onset hypogammaglobulinemia with lymphopenia without the classical presentation of atypical Activated phosphoinositide 3-kinase δ syndrome (ADPS-1), underlining thus the heterogeneous clinical and immunological presentation of p110δ mutated individuals and offers additional data on the role of p110δ in early and late B cell development in humans. 30639166 2019
Entrez Id: 53637
Gene Symbol: S1PR5
S1PR5
0.010 Biomarker disease BEFREE There are promising data suggesting that it may also have a direct neuroprotective property independent of peripheral lymphocytopenia.<b>Areas covered</b>: We reviewed the pharmacology and the clinical and radiological effects of siponimod.<b>Expert opinion</b>: The selective effect of siponimod on the S1P1 and S1P5 receptors offers a favorable side-effect profile and transient bradycardia can be avoided by dose titration. 31603362 2019
Entrez Id: 2252
Gene Symbol: FGF7
FGF7
0.010 Biomarker disease BEFREE Keratinocyte growth factor impairs human thymic recovery from lymphopenia. 31063156 2019
Entrez Id: 8456
Gene Symbol: FOXN1
FOXN1
0.010 GeneticVariation disease BEFREE Heterozygous FOXN1 Variants Cause Low TRECs and Severe T Cell Lymphopenia, Revealing a Crucial Role of FOXN1 in Supporting Early Thymopoiesis. 31447097 2019
Entrez Id: 406914
Gene Symbol: MIR127
MIR127
0.010 AlteredExpression disease BEFREE Inhibition of miR-127-3p function in Lineage-negative cells, achieved through a lentiviral-sponge vector, led to severe stem cell depletion, as assessed with serial transplantation assays. miR-127-3p-sponged stem cells displayed accelerated differentiation, which was uncoupled from proliferation, accounting for the observed stem cell reduction. miR-127-3p overexpression in Lineage-negative cells did not alter stem cell pool size, but gave rise to lymphopenia, likely due to lack of miR-127-3p physiological downregulation beyond the stem cell stage. 30792210 2019
Entrez Id: 920
Gene Symbol: CD4
CD4
0.010 GeneticVariation disease BEFREE Here we report for the first time an absolute CD4 lymphocytopenia (<0.01 CD4<sup>+</sup> T-cells/μl) due to an autosomal recessive CD4 gene mutation that completely abrogates CD4 protein expression on the surface membrane of T-cells, monocytes, and dendritic cells. 31781092 2019
Entrez Id: 342898
Gene Symbol: SYCN
SYCN
0.010 Biomarker disease BEFREE It undergoes phosphorylation to the active SYL-927-P <i>in vivo</i>, which activates S1P<sub>1</sub> on lymphocytes, causing lymphopenia by retention of lymphocytes in the lymph nodes. 30782260 2019
Entrez Id: 5920
Gene Symbol: PLAAT4
PLAAT4
0.010 Biomarker disease BEFREE In this study, we aimed to determine retinoic acid-inducible gene I (RIG-I) expression in peripheral T lymphocytes and explore the correlation between RIG-I and T cell lymphopenia in DM. 31142372 2019
Entrez Id: 3812
Gene Symbol: KIR3DL2
KIR3DL2
0.010 AlteredExpression disease BEFREE KIR3DL2 expression on T cells is highly specific and helps the early diagnosis of SS, especially in those patients with lymphopenia. 31487384 2019
Entrez Id: 49
Gene Symbol: ACR
ACR
0.010 Biomarker disease BEFREE "Leukopenia or lymphopenia'' was present in 59% (19/32) of patients where SLICC-12 criteria allowed for earlier classification than ACR-97, compared with 15.4% (2/13) of patients where ACR-97 allowed earlier classification than SLICC-12 ( p = 0.02). 30463470 2019
Entrez Id: 4772
Gene Symbol: NFATC1
NFATC1
0.010 AlteredExpression disease BEFREE Overall, deficiency in NFATc1 activity arrested the pro-B cell transition to the pre-B cell stage, leading to severe B cell lymphopenia. 29907883 2019
Entrez Id: 79576
Gene Symbol: NKAP
NKAP
0.010 AlteredExpression disease BEFREE Previous studies demonstrated that the loss of NKAP, a transcriptional regulator of T cell maturation, caused peripheral T cell lymphopenia and enhanced complement susceptibility. 31175160 2019
Entrez Id: 55821
Gene Symbol: ALLC
ALLC
0.010 Biomarker disease BEFREE Moreover, the lymphocyte recovery ability (post-CRT ALC divided by pre-CRT ALC) was not affected by lymphopenia grade during CRT (0.66 in G0-3 vs. 0.65 in G4, p = 0.473). 30935587 2019
Entrez Id: 23586
Gene Symbol: DDX58
DDX58
0.010 Biomarker disease BEFREE The RIG-I pathway is involved in peripheral T cell lymphopenia in patients with dermatomyositis. 31142372 2019
Entrez Id: 4635
Gene Symbol: MYL4
MYL4
0.010 Biomarker disease BEFREE The 102 patients with ALC1 ≤1,479 cells/μl (defined as lymphopenia) had significantly higher 10-year IBTR rate than the 102 patients with ALC1 >1,479 cells/μl (16.2% vs. 1%, p=0.0034). 31366546 2019