Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.600 GeneticVariation group BEFREE Protein tyrosine kinase 7 (Ptk7) was shown to cause a very severe form of NTDs called craniorachischisis in a mouse model and genetically interacts with a core PCP member Vangl2 where double heterozygotes suffer from spina bifida. 26368655 2015
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.600 GeneticVariation group BEFREE Loop-tail (Lp) mice show a very severe neural tube defect (craniorachischisis) caused by mutations in the Vangl2 gene (D255E, S464N). 20329788 2010
Entrez Id: 81839
Gene Symbol: VANGL1
VANGL1
0.600 GeneticVariation group BEFREE The single nucleotide polymorphism (SNP) of the vangl1 gene is highly correlated with Neural Tube Defects (NTDs), a group of severe congenital malformations. 26914375 2016
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.600 GeneticVariation group BEFREE We also show that Lrp6(Skax26-Jus) genetically interacts with a PCP mutant (Vangl2(Lp)) where double heterozygotes showed an increased frequency of NTDs and defects in cochlear hair cells' polarity. 24203697 2014
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.600 GeneticVariation group BEFREE Here, we present the results of VANGL1 and VANGL2 mutational screening in a series of 53 NTD patients and 27 couples with a previous NTD affected pregnancy. 25208524 2015
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.600 GeneticVariation group BEFREE Mutations in the Planar Cell Polarity (PCP) core gene Vangl2 cause the most severe neural tube defects (NTD) in mice and humans. 23029439 2012
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.600 GeneticVariation group BEFREE Of interest are two arginine residues, R181 and R274, that are highly conserved in Vangl protein homologues and found to be independently mutated in VANGL1 (R181Q and R274Q) and VANGL2 (R177H and R270H) in human cases of NTDs. 25068569 2014
Entrez Id: 57216
Gene Symbol: VANGL2
VANGL2
0.600 GeneticVariation group BEFREE Recently, however, pathogenic mutations of VANGL1 and VANGL2 genes have been associated with some cases of human NTDs. 21840926 2011
Entrez Id: 81839
Gene Symbol: VANGL1
VANGL1
0.600 GeneticVariation group BEFREE Recently, however, pathogenic mutations of VANGL1 and VANGL2 genes have been associated with some cases of human NTDs. 21840926 2011
Entrez Id: 81839
Gene Symbol: VANGL1
VANGL1
0.600 GeneticVariation group BEFREE Of interest are two arginine residues, R181 and R274, that are highly conserved in Vangl protein homologues and found to be independently mutated in VANGL1 (R181Q and R274Q) and VANGL2 (R177H and R270H) in human cases of NTDs. 25068569 2014
Entrez Id: 81839
Gene Symbol: VANGL1
VANGL1
0.600 GeneticVariation group BEFREE Therefore, the rs4839469 allele of VANGL1 was obviously associated with NTDs. 24407469 2014
Entrez Id: 81839
Gene Symbol: VANGL1
VANGL1
0.600 GeneticVariation group BEFREE We identified three heterozygous missense variants in VANGL1, p.Ala187Val, p.Asp389His, and p.Arg517His, that are absent in controls and predicted to be detrimental on the protein function and, thus, we expanded the mutational spectrum of VANGL1 in NTD cases. 25208524 2015
Entrez Id: 81839
Gene Symbol: VANGL1
VANGL1
0.600 GeneticVariation group BEFREE VANGL1 rare variants associated with neural tube defects affect convergent extension in zebrafish. 20043994 2011
Entrez Id: 80199
Gene Symbol: FUZ
FUZ
0.590 GeneticVariation group BEFREE Among the two communities, Muslim NTD mothers had higher TT genotype showing increased risk for neural tube defects (adjusted OR: 12.9; 95% CI: 1.21-136.8) and lower folic acid supplementation (adjusted OR: 3.5; 95% CI: 1.18-10.22). 21792640 2011
Entrez Id: 80199
Gene Symbol: FUZ
FUZ
0.590 GeneticVariation group BEFREE Similarly, attention focused on the human homologues of mouse NTD genes has contributed only limited positive findings to date, although an emerging association between genes of the non-canonical Wnt (planar cell polarity) pathway and NTDs provides candidates for future studies. 19808787 2009
Entrez Id: 80199
Gene Symbol: FUZ
FUZ
0.590 GeneticVariation group BEFREE The inspired suggestion by Smithells that common vitamins might prevent NTDs ignited a decade of biochemical investigations-first exploring the nutritional and metabolic factors related to NTDs, then onto the hunt for NTD genes. 19235830 2009
Entrez Id: 80199
Gene Symbol: FUZ
FUZ
0.590 GeneticVariation group BEFREE Because mice appear to show mostly single gene inheritance for NTDs and humans show multifactorial inheritance, mice sometimes have been characterized as a simpler model for the identification and study of NTD genes.But are they a simple model? 27768235 2017
Entrez Id: 80199
Gene Symbol: FUZ
FUZ
0.590 GeneticVariation group BEFREE Possible interaction of genotypes at cystathionine beta-synthase and methylenetetrahydrofolate reductase (MTHFR) in neural tube defects. NTD Collaborative Group. 10517251 1999
Entrez Id: 80199
Gene Symbol: FUZ
FUZ
0.590 GeneticVariation group BEFREE The thermolabile variant of methylenetetrahydrofolate reductase (MTHFR) is not a major risk factor for neural tube defect in American Caucasians. The NTD Collaborative Group. 10732818 1997
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.400 GeneticVariation group LHGDN Non-Latin European descent could be a requirement for association of NTDs and MTHFR variant 677C > T: a meta-analysis. 17618486 2007
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.400 GeneticVariation group BEFREE In the father group, MTHFR C677T was a risk factor for NTDs. 31238314 2019
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.400 GeneticVariation group LHGDN Thrombophilia-associated gene mutations in women with pregnancies complicated by fetal neural tube defects. 18068170 2008
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.400 GeneticVariation group BEFREE Omphalocele cases were significantly more likely to carry the T allele of MTHFR 677C-->T, a known risk factor for NTDs (odds ratio 3.50, 95% confidence interval 1.07-11.47, P=0.035). 15937947 2005
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.400 GeneticVariation group BEFREE Correlation of polymorphism of MTHFRs and RFC-1 genes with neural tube defects in China. 18022874 2008
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.400 GeneticVariation group BEFREE Low folate intake as well as alterations in folate metabolism as a result of polymorphisms in the enzyme methylenetetrahydrofolate reductase (MTHFR) have been associated with an increased incidence of neural tube defects, vascular disease, and some cancers. 11274424 2001