Source: BEFREE ×
Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE BRAF-V600E mutation was significantly associated with proximal localisation (OR = 2.71; P < 0.00001) and CIMP-H status (OR = 4.81; P < 0.0001) in both SSA and TSA, with polyp size <10 mm (OR = 0.41; P = 0.02) in TSA, and with endoscopic pit pattern II-O (OR = 13.11; P < 0.00001) and expression of MUC5A5 (OR = 4.43; P = 0.003) and MUC6 (OR = 2.28; P < 0.05) in SSA. 30815911 2019
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE Laser microdissection-based sequencing analysis showed that BRAF or KRAS mutations were shared between TSA and precursor polyps in all lesions. 30179900 2019
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE The subgroup of colon cancer (CRC) characterized by mutation in the BRAF gene and high mutation rate in the genomic DNA sequence, known as the microsatellite instability (MSI) phenotype, accounts for roughly 10% of the patients and derives from polyps with a serrated morphology. 30623363 2019
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE BRAF-mutated polyps were more likely than KRAS-mutated polyps to arise in a precursor polyp (82% versus 18%, P < 0.001), and were more likely to have slit-like serrations (100% versus 73%, P = 0.003). 30007084 2018
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE These results illustrate the importance of RNF43, along with BRAF mutation in the serrated neoplasia pathway (both the sporadic and familial forms), inform genetic diagnosis protocol and raise therapeutic opportunities through Wnt inhibition in different stages of evolution of serrated polyps. 27329244 2017
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE Patients were classified into 3 subgroups, based on the polyp mutational profile at baseline, as follows: non-mutated polyps (Wild-type), at least one BRAF-mutated polyp, or at least one KRAS-mutated polyp. 28953955 2017
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 Biomarker phenotype BEFREE The contention is that BRAF inhibitor induced polyps mimic the afore-described histology and molecular features of serrated polyps with the exception that instead of the presence of <i>BRAF</i> mutations they induce C-RAF homodimers and B-RAF: C-RAF heterodimers. 28533659 2017
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE The aim of this study was to investigate BRAF mutation and DNA methylation in colorectal serrated polyps and the right colon.Between 2005 and 2013, 146 colon polyps (47 tubular adenomas [TAs], 53 traditional serrated adenomas [TSAs], 17 sessile serrated adenomas/polyps [SSAs], and 29 hyperplastic polyps in the proximal colon [PHPs]) were collected from patients. 27930579 2016
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE The BRAF(V600E) mutation was present in four polyps, all of SSA subtype (one with dysplasia). 27020206 2016
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE Histologically, BRAF mutation was associated with a poorly differentiated histology, a serrated precursor polyp and focal signet ring cell differentiation (p=0.042, 0.008 and 0.008, respectively). 26500331 2016
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE Interestingly, considerable variability in the KRAS and BRAF mutations rates were found among different types of polyps. 26910894 2016
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE BRAF-mutated index TSAs were strongly associated with a right-sided location and BRAF mutation of synchronous/metachronous serrated polyps (P = 0.013 and P = 0.005, respectively). 26496853 2016
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE Cancer (214 BRAF mutant, 122 BRAF wild type) and polyp (59 serrated polyps, 40 conventional adenomas) cohorts were analysed for PRDM5 promoter methylation using MethyLight technology. 25613750 2015
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE BRAF mutant traditional serrated adenomas were more frequently proximal (39% versus 2%; P≤0.0001), were exclusively associated with a precursor polyp (57% versus 0%; P≤0.0001), and were more frequently CpG island methylator phenotype high (60% versus 16%; P≤0.0001) than KRAS mutant traditional serrated adenomas. 25216220 2015
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 PosttranslationalModification phenotype BEFREE Importantly, BRAF-mutated TSAs had more widespread methylation of a 5-marker CpG island panel compared with KRAS-mutated polyps. 25127095 2014
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE We proposed that immunohistochemical detection of BRAF((V600E)) using a BRAF((V600E)) mutation-specific antibody is a feasible technique for reproducibly identifying proximal serrated polyps with malignant potential in clinical practice, which may need more aggressive treatment and vigilant clinical monitoring. 25550768 2014
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE BRAF((V600E)) mutation is not a frequent event in right colon serrated polyps in a subset of the Chinese population. 24570042 2014
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE BRAF mutations were found in 9 (8.7%) precursor lesions, mainly associated with serrated polyps and absent in adenomas (P<0.001). 25050586 2014
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE A per-patient analysis revealed that all patients had a BRAF or KRAS mutation in more than 25% of their polyps; 84.8% of patients had a mutation in BRAF or KRAS in more than 50% of their polyps. 23376323 2013
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE All polyps showed the BRAF-V600E mutation. 23648458 2013
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE Risk factors for CIMP-high-serrated lesions included Caucasian race, current smoking status, and a history of polyps, whereas for serrated lesions with mutant BRAF, the significant risk factors were male sex, current smoking status, obesity, and a history of polyps. 23539450 2013
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE Previous studies demonstrated a high prevalence of a BRAF p.V600E mutation in perineuriomas with serrated crypts and suggested that perineuriomas without crypt serration may represent an unrelated, different type of polyp. 23588369 2013
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE Mutations in BRAF and KRAS and mismatch repair protein expression were determined in a subset of polyps. 22510757 2012
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE With regard to HP, KRAS mutations were present in 31.1% of polyps and BRAF mutations in 46.7% of polyps. 21836485 2011
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation phenotype BEFREE Up and downregulation of p16(Ink4a) expression in BRAF-mutated polyps/adenomas indicates a senescence barrier in the serrated route to colon cancer. 21423154 2011