Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.060 GeneticVariation disease BEFREE Likewise, patients positive for the HLA-DRB1 SE and RF alone had a higher risk of developing rheumatoid nodules in presence of the AA and AG alleles of rs1801275 (ORadj=8.45 (95% CI, 1.57 to 45.44), P=0.01, and ORadj=3.57 (95% CI, 1.18 to 10.76), P=0.02, respectively) and in the presence of AA allele of rs1805010 (ORadj=4.52 (95% CI, 1.20 to 17.03), P=0.03). 20444266 2010
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.060 GeneticVariation disease BEFREE Lack of association of the HLA-DRB1 shared epitope with rheumatoid nodules: an individual patient data meta-analysis of 3,272 Caucasian patients with rheumatoid arthritis. 15022316 2004
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.060 GeneticVariation disease BEFREE HLA-DRB1 alleles were analysed, including DRB1*04 subtypes and associations of DRB1*04 haplotypes with DQB1*0301 or DQB1*0302 alleles, the age of the patients at disease onset, the presence of rheumatoid factor (RF), joint erosions, and rheumatoid nodules. 11247876 2001
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.060 GeneticVariation disease BEFREE Not all shared epitope DRB1 genotypes conferred the same relative risk, and the male RA group tended to have more compound heterozygous genotypes and more severe RA as indicated by rheumatoid nodules and SAARD usage. 10332964 1999
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.060 GeneticVariation disease BEFREE HLA DRB1* alleles in rheumatoid nodulosis: a comparative study with rheumatoid arthritis with and without nodules. 9592863 1998
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.060 GeneticVariation disease BEFREE Rheumatoid nodules were highly associated with a heterozygosity for two disease associated HLA-DRB1 alleles. 1602009 1992
Entrez Id: 4314
Gene Symbol: MMP3
MMP3
0.020 AlteredExpression disease BEFREE Expression of MMP-1 and MMP-3 predominated in synovia, whereas MMP-12 expression was significantly higher in rheumatoid nodules. 23343931 2013
Entrez Id: 4314
Gene Symbol: MMP3
MMP3
0.020 GeneticVariation disease BEFREE Individuals carrying MMP-3 5A allele have significant higher frequency of extra-articular manifestations and rheumatoid nodules than individuals homozygous for 6A allele (P < 0.05). 19504098 2010
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.020 AlteredExpression disease BEFREE The cytokine profile within the rheumatoid nodule (i.e., presence of IFNgamma but not IL-2, and prominent expression of IL-1beta and TNFalpha together with IL-12, IL-18, IL-15, and IL-10) is similar to the profile of cytokines in the synovial lesion of rheumatoid arthritis, which is generally accepted as being attributable to a Th1-mediated inflammatory mechanism. 12571841 2003
Entrez Id: 129831
Gene Symbol: RBM45
RBM45
0.020 GeneticVariation disease BEFREE HLA-DRB1 alleles were analysed, including DRB1*04 subtypes and associations of DRB1*04 haplotypes with DQB1*0301 or DQB1*0302 alleles, the age of the patients at disease onset, the presence of rheumatoid factor (RF), joint erosions, and rheumatoid nodules. 11247876 2001
Entrez Id: 129831
Gene Symbol: RBM45
RBM45
0.020 GeneticVariation disease BEFREE Not all shared epitope DRB1 genotypes conferred the same relative risk, and the male RA group tended to have more compound heterozygous genotypes and more severe RA as indicated by rheumatoid nodules and SAARD usage. 10332964 1999
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.020 AlteredExpression disease BEFREE Cytokine content (tumor necrosis factor alpha [TNFalpha], interleukin-1beta [IL-1beta], and IL-1 receptor antagonist [IL-1Ra]), at the messenger RNA (mRNA) and protein levels, and cell adhesion molecule expression were studied in 16 rheumatoid nodules and 6 synovial membranes. 9778219 1998
Entrez Id: 23583
Gene Symbol: SMUG1
SMUG1
0.010 AlteredExpression disease BEFREE Traditional CV risk factors and RA disease characteristics (rheumatoid nodules and the Disease Activity Score in 28 joints using the C-reactive protein level in anti-CCP antibody-positive individuals) were independently associated with ascending aortic FDG uptake in RA patients without clinical CVD. 28992382 2018
Entrez Id: 4316
Gene Symbol: MMP7
MMP7
0.010 AlteredExpression disease BEFREE We assessed the relative contribution from MMP-1, MMP-3, MMP-7 and MMP-12 to joint and extra-articular tissue destruction and inflammation by comparing gene expression in joint synovia and subcutaneous rheumatoid nodules from RA patients. 23343931 2013
Entrez Id: 4321
Gene Symbol: MMP12
MMP12
0.010 AlteredExpression disease BEFREE Expression of MMP-1 and MMP-3 predominated in synovia, whereas MMP-12 expression was significantly higher in rheumatoid nodules. 23343931 2013
Entrez Id: 4312
Gene Symbol: MMP1
MMP1
0.010 AlteredExpression disease BEFREE Expression of MMP-1 and MMP-3 predominated in synovia, whereas MMP-12 expression was significantly higher in rheumatoid nodules. 23343931 2013
Entrez Id: 4153
Gene Symbol: MBL2
MBL2
0.010 GeneticVariation disease BEFREE Considering MBL2 variants together, we found an increased frequency of the OO genotype among patients with rheumatoid nodules (p = 0.031), although this association lost significance after Bonferroni correction. 22002015 2012
Entrez Id: 54106
Gene Symbol: TLR9
TLR9
0.010 AlteredExpression disease BEFREE Herein we suggest that B-lymphocytes and plasmacytoid dendritic cells contribute the ∼3-fold higher TLR9-A transcript levels observed in inflamed synovium when compared to subcutaneous rheumatoid nodules. 21115235 2011
Entrez Id: 3566
Gene Symbol: IL4R
IL4R
0.010 GeneticVariation disease BEFREE Association of IL4R single-nucleotide polymorphisms with rheumatoid nodules in African Americans with rheumatoid arthritis. 20444266 2010
Entrez Id: 3605
Gene Symbol: IL17A
IL17A
0.010 Biomarker disease BEFREE Different T cell subsets in the nodule and synovial membrane: absence of interleukin-17A in rheumatoid nodules. 18512780 2008
Entrez Id: 3605
Gene Symbol: IL17A
IL17A
0.010 AlteredExpression disease LHGDN Different T cell subsets in the nodule and synovial membrane: absence of interleukin-17A in rheumatoid nodules. 18512780 2008
Entrez Id: 29126
Gene Symbol: CD274
CD274
0.010 GeneticVariation disease BEFREE PD-L1 6777 G was associated with the prevalence of rheumatoid nodule. 17597384 2007
Entrez Id: 4548
Gene Symbol: MTR
MTR
0.010 GeneticVariation disease BEFREE The MTR 2756GG genotype, low plasma vitamin B12 levels, and the presence of rheumatoid nodules predicted MIARN. 17611986 2007
Entrez Id: 80380
Gene Symbol: PDCD1LG2
PDCD1LG2
0.010 GeneticVariation disease BEFREE In contrast, the PD-L2 47103 C/T and 47139 T/C polymorphisms were not related to the occurrence of rheumatoid nodule. 17597384 2007
Entrez Id: 6556
Gene Symbol: SLC11A1
SLC11A1
0.010 Biomarker disease BEFREE NRAMP1 823 C/C prevents the development of rheumatoid nodule in RA patients. 16125248 2006