Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 6598
Gene Symbol: SMARCB1
SMARCB1
0.190 Biomarker group BEFREE Cribriform neuroepithelial tumor (CRINET) is a recently recognized central nervous system neoplasm that arises in the ventricles of young children and is characterized by primitive, non-rhabdoid SMARCB1-deficient cells with prominent cribriform architecture. 23495723 2013
Entrez Id: 6598
Gene Symbol: SMARCB1
SMARCB1
0.190 Biomarker group BEFREE Whether INI1 plays a role in the pathogenesis of other central nervous system tumors is uncertain. 19915490 2009
Entrez Id: 6598
Gene Symbol: SMARCB1
SMARCB1
0.190 Biomarker group BEFREE Immunohistochemical analysis of hSNF5/INI1 in pediatric CNS neoplasms. 15105654 2004
Entrez Id: 6598
Gene Symbol: SMARCB1
SMARCB1
0.190 GeneticVariation group BEFREE We and other investigators have identified deletions and mutations of the INI1 gene in the majority of rhabdoid tumors of the central nervous system, kidney, and extrarenal tissues. 12112529 2002
Entrez Id: 6598
Gene Symbol: SMARCB1
SMARCB1
0.190 GeneticVariation group BEFREE The highest frequencies of INI1 mutations for kidney tumors were seen in exons 2, 6, and 7, compared with exons 5 and 9 for CNS tumors. 12429635 2002
Entrez Id: 6598
Gene Symbol: SMARCB1
SMARCB1
0.190 GeneticVariation group BEFREE Mutations of the INI1 rhabdoid tumor suppressor gene in medulloblastomas and primitive neuroectodermal tumors of the central nervous system. 10914721 2000
Entrez Id: 6598
Gene Symbol: SMARCB1
SMARCB1
0.190 CausalMutation group CLINVAR
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.130 GeneticVariation group BEFREE The Consortium to Inform Molecular and Practical Approaches to CNS Tumor Taxonomy (cIMPACT-NOW) has recommended that isocitrate dehydrogenase 1 and 2 wildtype (IDH1/2wt) diffuse lower-grade gliomas (LGGs) WHO grade II or III that present with a) a telomerase reverse transcriptase promoter mutation (pTERTmt), and/or b) gain of chromosome 7 combined with loss of chromosome 10, and/or c) epidermal growth factor receptor (EGFR) amplification should be reclassified as diffuse astrocytic glioma, IDH1/2-wildtype, with molecular features of glioblastoma, WHO grade IV (IDH1/2wt astrocytomas WHO IV). 31637414 2019
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.130 Biomarker group BEFREE Update 3 of the Consortium to Inform Molecular and Practical Approaches to CNS Tumor Taxonomy (cIMPACT-NOW) recognizes amplification of epidermal growth factor receptor (EGFR) as one important aberration in diffuse gliomas (World Health Organization [WHO] grade II/III). 30496526 2019
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.130 GeneticVariation group GWASCAT Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors. 28346443 2017
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.130 GeneticVariation group GWASCAT Genome-wide association study identifies multiple susceptibility loci for glioma. 26424050 2015
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.130 GeneticVariation group GWASCAT Chromosome 7p11.2 (EGFR) variation influences glioma risk. 21531791 2011
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.130 GeneticVariation group BEFREE Rearrangements of EGFR are known to occur in a significant fraction of glioblastomas, the most common and malignant form of central nervous system tumor. 9790506 1998
Entrez Id: 2130
Gene Symbol: EWSR1
EWSR1
0.120 GeneticVariation group BEFREE Testing for the EWSR1 mutation confirms the diagnosis of Ewing sarcoma and excludes other types of embryonal CNS tumors. 29285586 2018
Entrez Id: 2130
Gene Symbol: EWSR1
EWSR1
0.120 Biomarker group BEFREE Central PNETs show a spectrum of morphologic features that overlaps with CNS tumors but lack EWSR1 rearrangements. 28296680 2017
Entrez Id: 2130
Gene Symbol: EWSR1
EWSR1
0.120 Biomarker group HPO
Entrez Id: 6597
Gene Symbol: SMARCA4
SMARCA4
0.110 Biomarker group BEFREE Loss of BRG1 (<i>SMARCA4</i>) Immunoexpression in a Pediatric Non-Central Nervous System Tumor Cohort. 31403913 2020
Entrez Id: 2048
Gene Symbol: EPHB2
EPHB2
0.110 Biomarker group BEFREE Recent studies highlight the importance of BRAF alterations resulting in mitogen activated protein kinase (MAK/ERK) pathway activation in low-grade CNS tumors. 22157620 2012
Entrez Id: 2048
Gene Symbol: EPHB2
EPHB2
0.110 Biomarker group HPO
Entrez Id: 6597
Gene Symbol: SMARCA4
SMARCA4
0.110 Biomarker group HPO
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation group BEFREE In this review the different central nervous system tumors harboring BRAF alterations are presented and the diagnostic significance, prognostic role, and therapeutic potential are discussed. 31181803 2019
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation group BEFREE We have previously shown that central nervous system (CNS) tumors with the BRAF<sup>V600E</sup> mutation are autophagy dependent, and late-stage autophagy inhibition improves the response to targeted BRAF inhibitors (BRAFi) in sensitive and resistant cells. 31515514 2019
Entrez Id: 3417
Gene Symbol: IDH1
IDH1
0.100 Biomarker group BEFREE The Consortium to Inform Molecular and Practical Approaches to CNS Tumor Taxonomy (cIMPACT-NOW) has recommended that isocitrate dehydrogenase 1 and 2 wildtype (IDH1/2wt) diffuse lower-grade gliomas (LGGs) WHO grade II or III that present with a) a telomerase reverse transcriptase promoter mutation (pTERTmt), and/or b) gain of chromosome 7 combined with loss of chromosome 10, and/or c) epidermal growth factor receptor (EGFR) amplification should be reclassified as diffuse astrocytic glioma, IDH1/2-wildtype, with molecular features of glioblastoma, WHO grade IV (IDH1/2wt astrocytomas WHO IV). 31637414 2019
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation group BEFREE BRAF V600E-mutated central nervous system tumor with divergent morphological feature - Anaplastic pleomorphic xanthoastrocytoma-like and astroblastoma-like. 30557911 2019
Entrez Id: 3417
Gene Symbol: IDH1
IDH1
0.100 Biomarker group BEFREE Detection of mutations in the isocitrate dehydrogenase 1 (IDH1) gene is useful for accurate diagnosis of lower grade gliomas, as described in the 2016 World Health Organization classification of tumors of the central nervous system. 29460200 2018