Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3280
Gene Symbol: HES1
HES1
0.010 GeneticVariation disease BEFREE Increased detections of Wnt/beta-catenin (enhanced presence of Wnt5a, Wnt7a, and beta-catenin), SHH (detection of Gli1 and Hes1), and mTOR (identification of mTOR and rpS6) signaling pathways were found in the subepithelial pannus and epithelium of all ARK corneas, when compared with normal controls. 30480741 2018
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.040 Biomarker disease BEFREE Histologic and immunohistochemical analysis of the arthritic joints in GTP-fed mice demonstrated only marginal joint infiltration by IFN-gamma and tumor necrosis factor alpha-producing cells as opposed to massive cellular infiltration and fully developed pannus in arthritic joints of non-GTP-fed mice. 10200295 1999
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.040 Biomarker disease BEFREE Furthermore, the migration of cells from the pannus-like tissue was enhanced by IL-1β, while plica cell migration was enhanced by TNF-α. 24223987 2013
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.040 Biomarker disease BEFREE Invasion of the extracellular matrix (ECM) is accompanied by angiogenesis, in which vascular endothelial growth factor (VEGF) and tissue inhibitors of metalloproteinases (TIMPs), produced by synoviocytes lining the pannus, have a primary role. 17062432 2006
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.040 Biomarker disease BEFREE The human tumour necrosis factor (TNF) transgenic (hTNFtg) mouse model of RA was used to analyse the time course of pannus attachment to the cartilage and cartilage destruction, respectively, and crossed hTNFtg mice with interleukin (IL)-1(-/-) animals were used to investigate the role of IL-1 on these TNF-induced mechanisms in vivo. 22258493 2012
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.040 Biomarker disease BEFREE The human tumour necrosis factor (TNF) transgenic (hTNFtg) mouse model of RA was used to analyse the time course of pannus attachment to the cartilage and cartilage destruction, respectively, and crossed hTNFtg mice with interleukin (IL)-1(-/-) animals were used to investigate the role of IL-1 on these TNF-induced mechanisms in vivo. 22258493 2012
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.040 Biomarker disease BEFREE Since development of the destructive synovial pannus in rheumatoid arthritis (RA) is associated with changes in vascular permeability (synovial fluid accumulation), synovial cell hyperplasia, and angiogenesis, we examined synovial fluids (SFs) and joint tissue for the expression and local accumulation of VPF/VEGF. 8006592 1994
Entrez Id: 4318
Gene Symbol: MMP9
MMP9
0.030 Biomarker disease BEFREE Immunohistochemical staining also demonstrated high expression of MMP-2, MMP-3, and MMP-9 in plica and pannus-like tissue of stage IV OA knees and not in normal cartilage. 24223987 2013
Entrez Id: 3605
Gene Symbol: IL17A
IL17A
0.020 Biomarker disease BEFREE The expression of all IL-17 cytokines in RA synovium and pannus as well as in the synovium of OA was determined using quantitative RT-PCR (qRT-PCR).IL-17A and IL-17B were immunostained. 24056520 2014
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.020 Biomarker disease BEFREE On 3T3 fibroblast feeder layers, Pax6 immunostaining was negative in clones generated from epithelial cells harvested from corneal pannus from SJS or aniridia, but positive in those from the normal limbal epithelium; whereas western blots showed that some epithelial clones expanded from pannus retained Pax6 expression. 18027901 2008
Entrez Id: 8600
Gene Symbol: TNFSF11
TNFSF11
0.020 Biomarker disease BEFREE Resting and stimulated (p dependent on the cytokine used) pannus fibroblasts produced RANKL in excess (p=0.0005) and unstimulated pannus fibroblasts also effectively induced osteoclast-like cell formation from monocytes in vitro without any exogenous RANKL added. 18565244 2008
Entrez Id: 1009
Gene Symbol: CDH11
CDH11
0.020 Biomarker disease BEFREE A central role for cadherin-11 has also been suggested in the formation of the rheumatoid pannus. 28115292 2017
Entrez Id: 3552
Gene Symbol: IL1A
IL1A
0.020 Biomarker disease BEFREE The human tumour necrosis factor (TNF) transgenic (hTNFtg) mouse model of RA was used to analyse the time course of pannus attachment to the cartilage and cartilage destruction, respectively, and crossed hTNFtg mice with interleukin (IL)-1(-/-) animals were used to investigate the role of IL-1 on these TNF-induced mechanisms in vivo. 22258493 2012
Entrez Id: 4314
Gene Symbol: MMP3
MMP3
0.020 Biomarker disease BEFREE Proliferation of FLS, induction of pro-nflammatory cytokines and upregulation of metaloprotinase (MMP 3) the key pathologic events for pannus formation are regulated by IL-9 and its recptor. 30114630 2018
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.020 Biomarker disease BEFREE Corneal degeneration was age-related: Older Pax6(+/-) mice had prominent subepithelial pannus and more goblet cells in the peripheral corneal epithelium. 12714618 2003
Entrez Id: 3605
Gene Symbol: IL17A
IL17A
0.020 Biomarker disease BEFREE Histological analysis showed increased pannus formation associated with cartilage and bone erosion following injection with IL-17. 22825627 2012
Entrez Id: 2735
Gene Symbol: GLI1
GLI1
0.010 Biomarker disease BEFREE Increased detections of Wnt/beta-catenin (enhanced presence of Wnt5a, Wnt7a, and beta-catenin), SHH (detection of Gli1 and Hes1), and mTOR (identification of mTOR and rpS6) signaling pathways were found in the subepithelial pannus and epithelium of all ARK corneas, when compared with normal controls. 30480741 2018
Entrez Id: 27190
Gene Symbol: IL17B
IL17B
0.010 Biomarker disease BEFREE The expression of all IL-17 cytokines in RA synovium and pannus as well as in the synovium of OA was determined using quantitative RT-PCR (qRT-PCR).IL-17A and IL-17B were immunostained. 24056520 2014
Entrez Id: 3673
Gene Symbol: ITGA2
ITGA2
0.010 Biomarker disease BEFREE Specifically, Itga2(-/-) mice showed less severe clinical symptoms and dramatically reduced pannus formation and cartilage erosion. 22083543 2012
Entrez Id: 690
Gene Symbol: BTF3P11
BTF3P11
0.010 Biomarker disease BEFREE The high RANKL:OPG ratio, together with close fibroblast-to-monocyte contacts in pannus tissue, probably favor local generation of bone resorbing osteoclasts at the site of erosion in rheumatoid arthritis. 18565244 2008
Entrez Id: 80781
Gene Symbol: COL18A1
COL18A1
0.010 Biomarker disease BEFREE Endostatin gene transfer inhibits joint angiogenesis and pannus formation in inflammatory arthritis. 11991745 2002
Entrez Id: 1401
Gene Symbol: CRP
CRP
0.010 Biomarker disease BEFREE The C-reactive protein (CRP) in simple pannus removal group was lower on the first day (0.13 ± 0.09 vs 0.31 ± 0.22 mg/dl, P < 0.05) and continued to be lower within 1 week after operation. 31775823 2019
Entrez Id: 857
Gene Symbol: CAV1
CAV1
0.010 Biomarker disease BEFREE Vascularization was revealed by the presence of caveolin-1 and collagen IV in the pannus of all ARK aniridia corneas. 29889891 2018
Entrez Id: 968
Gene Symbol: CD68
CD68
0.010 Biomarker disease BEFREE Our study demonstrates a detailed local expression of TF in the rheumatoid synovium, and supports the notion that TF, expressed not only by the synoviocytes themselves, but also the infiltrating CD19(+) B cells and CD68(+) macrophages, is involved in the pannus invasion in the progression of rheumatoid arthritis. 23490466 2013
Entrez Id: 3578
Gene Symbol: IL9
IL9
0.010 Biomarker disease BEFREE Proliferation of FLS, induction of pro-nflammatory cytokines and upregulation of metaloprotinase (MMP 3) the key pathologic events for pannus formation are regulated by IL-9 and its recptor. 30114630 2018