Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE Variation in IRF6 contributes to nonsyndromic cleft lip and palate. 16096995 2005
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE We identified the gene that encodes interferon regulatory factor 6 (IRF6) as a candidate gene on the basis of its involvement in an autosomal dominant form of cleft lip and palate, Van der Woude's syndrome. 15317890 2004
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 Biomarker disease BEFREE Three of them--namely T-box transcription factor-22 (TBX22), poliovirus receptor like-1 (PVRL1), and interferon regulatory factor-6 (IRF6)--are responsible for causing X-linked cleft palate, cleft lip/palate-ectodermal dysplasia syndrome, and Van der Woude's and popliteal pterygium syndromes, respectively; they are also implied in non-syndromic cleft lip and palate. 15479962 2004
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 Biomarker disease BEFREE Linkage disequilibrium between MSX1 and non-syndromic cleft lip/palate in the Chilean population. 15381719 2004
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 Biomarker disease BEFREE With transmission disequilibrium test analysis, cleft lip with/without cleft palate, cleft lip with palate plus cleft palate only, and all datasets combined showed evidence of association with MSX1 (p = 0.004, p = 0.037, and p = 0.001, respectively). 12651933 2003
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 GeneticVariation disease BEFREE There was a positive association between subjects with cleft lip or cleft lip and palate who had hypodontia outside the cleft region (compared with noncleft controls) and both muscle segment homeo box homolog 1 (MSX1) (p =.029) and transforming growth factor beta 3 (TGFB3) (p =.024). 12733956 2003
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 Biomarker disease BEFREE Complete sequencing shows a role for MSX1 in non-syndromic cleft lip and palate. 12807959 2003
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 SusceptibilityMutation disease ORPHANET Complete sequencing shows a role for MSX1 in non-syndromic cleft lip and palate. 12807959 2003
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE We show that enhancers established by p63 are highly enriched for single-nucleotide polymorphisms associated with nonsyndromic cleft lip ± cleft palate (CL/P). 31049400 2019
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE We established an epidermal commitment model using human induced pluripotent stem cells (iPSCs) and characterized differentiation defects of iPSCs derived from ectrodactyly, ectodermal dysplasia, and cleft lip/palate (EEC) syndrome patients carrying p63 mutations. 31413199 2019
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE Mutations in the p63 DNA-binding domain are associated with ectrodactyly, ectodermal dysplasia, and cleft lip/palate (EEC) syndrome. 30566872 2018
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE We have established primary adult skin keratinocytes from ectrodactyly, ectodermal dysplasia, and cleft lip/palate (EEC) syndrome patients with p63 mutations as an in vitro human model to study the disease mechanism in the skin of EEC patients. 23355676 2013
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 SusceptibilityMutation disease ORPHANET Here, we report on a SAM domain mutation (p.Asp564His) in TP63 that predisposed the patients to have nonsyndromic cleft palate and nonsyndromic cleft lip and palate. 21567929 2011
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE Here, we report on a SAM domain mutation (p.Asp564His) in TP63 that predisposed the patients to have nonsyndromic cleft palate and nonsyndromic cleft lip and palate. 21567929 2011
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE Features between RHS and EEC syndrome (ectrodactyly, ectodermal dysplasia and cleft lip/palate) have led to the recent identification of mutations in the TP63 gene, located on 3q27, in this condition. 17609671 2007
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE The p63 protein is crucial for epidermal development, and its mutations cause the extrodactyly ectodermal dysplasia and cleft lip/palate syndrome. 16679535 2006
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 SusceptibilityMutation disease ORPHANET A mutation of the p63 gene in non-syndromic cleft lip. 16740912 2006
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE Two novel TP63 mutations associated with the ankyloblepharon, ectodermal defects, and cleft lip and palate syndrome: a skin fragility phenotype. 16365259 2005
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE A novel p63 sterile alpha motif (SAM) domain mutation in a Japanese patient with ankyloblepharon, ectodermal defects and cleft lip and palate (AEC) syndrome without ankyloblepharon. 12932250 2003
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.370 GeneticVariation disease BEFREE We present the first report, to our knowledge, of an Asian individual with cleft lip/palate-ectodermal dysplasia syndrome with a novel PVRL1 mutation. 25913853 2015
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.370 GeneticVariation disease BEFREE In particular, nectin-1 mutations cause cleft lip/palate ED (CLPED1; OMIM#225060), whereas defective nectin-4 is associated with ED-syndactyly syndrome (EDSS1; OMIM#613573). 24577405 2014
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.370 GeneticVariation disease BEFREE PVRL1 variants contribute to non-syndromic cleft lip and palate in multiple populations. 17089422 2006
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.370 SusceptibilityMutation disease ORPHANET Study of the PVRL1 gene in Italian nonsyndromic cleft lip patients with or without cleft palate. 16674562 2006
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.370 Biomarker disease BEFREE Three of them--namely T-box transcription factor-22 (TBX22), poliovirus receptor like-1 (PVRL1), and interferon regulatory factor-6 (IRF6)--are responsible for causing X-linked cleft palate, cleft lip/palate-ectodermal dysplasia syndrome, and Van der Woude's and popliteal pterygium syndromes, respectively; they are also implied in non-syndromic cleft lip and palate. 15479962 2004
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.370 GeneticVariation disease BEFREE This constellation of clinical signs is unique, but some overlap can be recognized with other ectodermal dysplasia syndromes, for example ectrodactyly--ectodermal dysplasia--cleft lip/palate (EEC; OMIM 604292), limb--mammary syndrome (LMS; OMIM 603543), acro-dermato-ungual-lacrimal-tooth syndrome (ADULT; OMIM 103285) and recessive cleft lip/palate--ectodermal dysplasia (CLPED1; OMIM 225060). 11159940 2001