Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE A novel p63 sterile alpha motif (SAM) domain mutation in a Japanese patient with ankyloblepharon, ectodermal defects and cleft lip and palate (AEC) syndrome without ankyloblepharon. 12932250 2003
Entrez Id: 10970
Gene Symbol: CKAP4
CKAP4
0.060 GeneticVariation disease BEFREE A novel p63 sterile alpha motif (SAM) domain mutation in a Japanese patient with ankyloblepharon, ectodermal defects and cleft lip and palate (AEC) syndrome without ankyloblepharon. 12932250 2003
Entrez Id: 7405
Gene Symbol: UVRAG
UVRAG
0.060 GeneticVariation disease BEFREE A novel p63 sterile alpha motif (SAM) domain mutation in a Japanese patient with ankyloblepharon, ectodermal defects and cleft lip and palate (AEC) syndrome without ankyloblepharon. 12932250 2003
Entrez Id: 6121
Gene Symbol: RPE65
RPE65
0.060 GeneticVariation disease BEFREE A novel p63 sterile alpha motif (SAM) domain mutation in a Japanese patient with ankyloblepharon, ectodermal defects and cleft lip and palate (AEC) syndrome without ankyloblepharon. 12932250 2003
Entrez Id: 7043
Gene Symbol: TGFB3
TGFB3
0.050 Biomarker disease BEFREE There was a positive association between subjects with cleft lip or cleft lip and palate who had hypodontia outside the cleft region (compared with noncleft controls) and both muscle segment homeo box homolog 1 (MSX1) (p =.029) and transforming growth factor beta 3 (TGFB3) (p =.024). 12733956 2003
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE We identified the gene that encodes interferon regulatory factor 6 (IRF6) as a candidate gene on the basis of its involvement in an autosomal dominant form of cleft lip and palate, Van der Woude's syndrome. 15317890 2004
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 Biomarker disease BEFREE Three of them--namely T-box transcription factor-22 (TBX22), poliovirus receptor like-1 (PVRL1), and interferon regulatory factor-6 (IRF6)--are responsible for causing X-linked cleft palate, cleft lip/palate-ectodermal dysplasia syndrome, and Van der Woude's and popliteal pterygium syndromes, respectively; they are also implied in non-syndromic cleft lip and palate. 15479962 2004
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 Biomarker disease BEFREE Linkage disequilibrium between MSX1 and non-syndromic cleft lip/palate in the Chilean population. 15381719 2004
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.370 Biomarker disease BEFREE Three of them--namely T-box transcription factor-22 (TBX22), poliovirus receptor like-1 (PVRL1), and interferon regulatory factor-6 (IRF6)--are responsible for causing X-linked cleft palate, cleft lip/palate-ectodermal dysplasia syndrome, and Van der Woude's and popliteal pterygium syndromes, respectively; they are also implied in non-syndromic cleft lip and palate. 15479962 2004
Entrez Id: 7039
Gene Symbol: TGFA
TGFA
0.100 GeneticVariation disease BEFREE Transforming growth factor-alpha (TGFA) was the first gene suggested to be associated with nonsyndromic cleft lip, cleft palate, or both (CL/ P). 15222785 2004
Entrez Id: 8048
Gene Symbol: CSRP3
CSRP3
0.100 GeneticVariation disease BEFREE There were 17 males and 16 females of Caucasian origin, ranging from 3 to 18 years (15 with cleft lip and palate [CLP], 10 with cleft lip [CL], and 8 with cleft palate [CP]), collected from five craniofacial centers (United States and Canada). 15516164 2004
Entrez Id: 810
Gene Symbol: CALML3
CALML3
0.100 GeneticVariation disease BEFREE There were 17 males and 16 females of Caucasian origin, ranging from 3 to 18 years (15 with cleft lip and palate [CLP], 10 with cleft lip [CL], and 8 with cleft palate [CP]), collected from five craniofacial centers (United States and Canada). 15516164 2004
Entrez Id: 23406
Gene Symbol: COTL1
COTL1
0.100 GeneticVariation disease BEFREE There were 17 males and 16 females of Caucasian origin, ranging from 3 to 18 years (15 with cleft lip and palate [CLP], 10 with cleft lip [CL], and 8 with cleft palate [CP]), collected from five craniofacial centers (United States and Canada). 15516164 2004
Entrez Id: 7039
Gene Symbol: TGFA
TGFA
0.100 Biomarker disease BEFREE Since cleft lip/palate is also associated with both tooth agenesis and the gene TGFA, we included TGFA in the analysis as well. 15329380 2004
Entrez Id: 50945
Gene Symbol: TBX22
TBX22
0.020 GeneticVariation disease BEFREE Three of them--namely T-box transcription factor-22 (TBX22), poliovirus receptor like-1 (PVRL1), and interferon regulatory factor-6 (IRF6)--are responsible for causing X-linked cleft palate, cleft lip/palate-ectodermal dysplasia syndrome, and Van der Woude's and popliteal pterygium syndromes, respectively; they are also implied in non-syndromic cleft lip and palate. 15479962 2004
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 GeneticVariation disease BEFREE In a Vietnamese population, MSX1 variants contribute to cleft lip and palate. 15354328 2005
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.400 GeneticVariation disease BEFREE Variation in IRF6 contributes to nonsyndromic cleft lip and palate. 16096995 2005
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.390 GeneticVariation disease BEFREE Two novel TP63 mutations associated with the ankyloblepharon, ectodermal defects, and cleft lip and palate syndrome: a skin fragility phenotype. 16365259 2005
Entrez Id: 23133
Gene Symbol: PHF8
PHF8
0.070 Biomarker disease BEFREE The association of XLMR and cleft lip/palate in these patients with mutations in PHF8 suggests an important function of PHF8 in midline formation and in the development of cognitive abilities, and links this gene to XLMR associated with cleft lip/palate. 16199551 2005
Entrez Id: 25859
Gene Symbol: PART1
PART1
0.040 Biomarker disease BEFREE Part 1. Understanding the embryology and genetics of cleft lip and palate. 15806447 2005
Entrez Id: 875
Gene Symbol: CBS
CBS
0.020 GeneticVariation disease BEFREE Cystathionine beta-synthase c.844ins68 gene variant and non-syndromic cleft lip and palate. 16007597 2005
Entrez Id: 635
Gene Symbol: BHMT
BHMT
0.020 Biomarker disease BEFREE The goal of our study was to investigate sequence variations in the betaine-homocysteine methyltransferase (BHMT) and betaine-homocysteine methyltransferase (BHMT2) genes as modifiers of risk of spina bifida, cleft palate, and cleft lip and palate. 15887275 2005
Entrez Id: 8871
Gene Symbol: SYNJ2
SYNJ2
0.010 GeneticVariation disease BEFREE Homozygous mutations were found in the synaptojanin 2 (SYNJ2) and the cleft lip and palate CLPTM1 genes. 16102578 2005
Entrez Id: 102724560
Gene Symbol: CBSL
CBSL
0.010 GeneticVariation disease BEFREE Cystathionine beta-synthase c.844ins68 gene variant and non-syndromic cleft lip and palate. 16007597 2005
Entrez Id: 23743
Gene Symbol: BHMT2
BHMT2
0.010 Biomarker disease BEFREE The goal of our study was to investigate sequence variations in the betaine-homocysteine methyltransferase (BHMT) and betaine-homocysteine methyltransferase (BHMT2) genes as modifiers of risk of spina bifida, cleft palate, and cleft lip and palate. 15887275 2005