Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7039
Gene Symbol: TGFA
TGFA
0.100 GeneticVariation disease BEFREE Association of genetic variation of the transforming growth factor-alpha gene with cleft lip and palate. 2570526 1989
Entrez Id: 7039
Gene Symbol: TGFA
TGFA
0.100 Biomarker disease BEFREE These findings indicate that CLP and TGFA are not tightly linked in these families. 1679292 1991
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.040 GeneticVariation disease BEFREE The malformations (n = 36) included hemifacial microsomia (n = 10), cleft lip and palate (n = 8), cleft palate (n = 4), rare facial cleft (n = 2), craniosynostosis (n = 2), Binder syndrome (n = 2), Treacher Collins syndrome (n = 2), craniopagus (n = 2), CHARGE association (n = 1), frontonasal dysplasia (n = 2), and constricted ears (n = 1). 1984262 1991
Entrez Id: 7039
Gene Symbol: TGFA
TGFA
0.100 GeneticVariation disease BEFREE Confirmation of an association between RFLPs at the transforming growth factor-alpha locus and non-syndromic cleft lip and palate. 1352354 1992
Entrez Id: 7039
Gene Symbol: TGFA
TGFA
0.100 GeneticVariation disease BEFREE No evidence of linkage between the transforming growth factor-alpha gene in families with apparently autosomal dominant inheritance of cleft lip and palate. 1352355 1992
Entrez Id: 7039
Gene Symbol: TGFA
TGFA
0.100 GeneticVariation disease BEFREE Genetic variation in transforming growth factor alpha: possible association of BamHI polymorphism with bilateral sporadic cleft lip and palate. 8103504 1993
Entrez Id: 7039
Gene Symbol: TGFA
TGFA
0.100 GeneticVariation disease BEFREE Association between alleles of the transforming growth factor alpha locus and cleft lip and palate in the Chilean population. 7573126 1995
Entrez Id: 174
Gene Symbol: AFP
AFP
0.010 AlteredExpression disease BEFREE One had bilateral choroid plexus cyst, intrauterine growth retardation, low levels of maternal serum alpha-fetoprotein and free beta-human chorionic gonadotropin, and the other had cleft lip and palate, single umbilical artery and intrauterine growth retardation. 8533570 1995
Entrez Id: 5077
Gene Symbol: PAX3
PAX3
0.010 GeneticVariation disease BEFREE Thus, a locus other than PAX 3 is implicated in this Waardenburg-like syndrome with Hirschsprung disease and cleft lip (palate). 7634536 1995
Entrez Id: 810
Gene Symbol: CALML3
CALML3
0.100 GeneticVariation disease BEFREE The identification of a genetic locus associated with this disease would be an important advance in CLP genetic counselling and lead to a better understanding of the genetic basis of CLP. 9081766 1996
Entrez Id: 23406
Gene Symbol: COTL1
COTL1
0.100 GeneticVariation disease BEFREE The identification of a genetic locus associated with this disease would be an important advance in CLP genetic counselling and lead to a better understanding of the genetic basis of CLP. 9081766 1996
Entrez Id: 8048
Gene Symbol: CSRP3
CSRP3
0.100 GeneticVariation disease BEFREE The identification of a genetic locus associated with this disease would be an important advance in CLP genetic counselling and lead to a better understanding of the genetic basis of CLP. 9081766 1996
Entrez Id: 5914
Gene Symbol: RARA
RARA
0.010 Biomarker disease BEFREE Moreover retinoic acid receptor alpha (RARA) (17q), MSXI (4p), 4q and BCL3 (19q) could all be implicated in certain CLP families. 9081766 1996
Entrez Id: 602
Gene Symbol: BCL3
BCL3
0.010 Biomarker disease BEFREE Moreover retinoic acid receptor alpha (RARA) (17q), MSXI (4p), 4q and BCL3 (19q) could all be implicated in certain CLP families. 9081766 1996
Entrez Id: 7043
Gene Symbol: TGFB3
TGFB3
0.050 Biomarker disease BEFREE Studies of the candidate genes TGFB2, MSX1, TGFA, and TGFB3 in the etiology of cleft lip and palate in the Philippines. 9003904 1997
Entrez Id: 7040
Gene Symbol: TGFB1
TGFB1
0.010 AlteredExpression disease BEFREE TGFbeta isoforms and decorin gene expression are modified in fibroblasts obtained from non-syndromic cleft lip and palate subjects. 10598907 1999
Entrez Id: 1634
Gene Symbol: DCN
DCN
0.010 AlteredExpression disease BEFREE TGFbeta isoforms and decorin gene expression are modified in fibroblasts obtained from non-syndromic cleft lip and palate subjects. 10598907 1999
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.370 GeneticVariation disease BEFREE Mutations of PVRL1, encoding a cell-cell adhesion molecule/herpesvirus receptor, in cleft lip/palate-ectodermal dysplasia. 10932188 2000
Entrez Id: 7039
Gene Symbol: TGFA
TGFA
0.100 GeneticVariation disease BEFREE Thus it is concluded that TGF genes play a role in craniofacial development, and that alleles of TGFalpha or/and TGFbeta2 are associated with cleft lip and cleft palate in Japanese populations. 10918043 2000
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.370 GeneticVariation disease BEFREE This constellation of clinical signs is unique, but some overlap can be recognized with other ectodermal dysplasia syndromes, for example ectrodactyly--ectodermal dysplasia--cleft lip/palate (EEC; OMIM 604292), limb--mammary syndrome (LMS; OMIM 603543), acro-dermato-ungual-lacrimal-tooth syndrome (ADULT; OMIM 103285) and recessive cleft lip/palate--ectodermal dysplasia (CLPED1; OMIM 225060). 11159940 2001
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.370 GeneticVariation disease BEFREE Mutation of PVRL1 is associated with sporadic, non-syndromic cleft lip/palate in northern Venezuela. 11559849 2001
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 Biomarker disease BEFREE With transmission disequilibrium test analysis, cleft lip with/without cleft palate, cleft lip with palate plus cleft palate only, and all datasets combined showed evidence of association with MSX1 (p = 0.004, p = 0.037, and p = 0.001, respectively). 12651933 2003
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 GeneticVariation disease BEFREE There was a positive association between subjects with cleft lip or cleft lip and palate who had hypodontia outside the cleft region (compared with noncleft controls) and both muscle segment homeo box homolog 1 (MSX1) (p =.029) and transforming growth factor beta 3 (TGFB3) (p =.024). 12733956 2003
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 Biomarker disease BEFREE Complete sequencing shows a role for MSX1 in non-syndromic cleft lip and palate. 12807959 2003
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.400 SusceptibilityMutation disease ORPHANET Complete sequencing shows a role for MSX1 in non-syndromic cleft lip and palate. 12807959 2003