Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.400 Biomarker disease CTD_human Deletion of PTEN in a patient with Bannayan-Riley-Ruvalcaba syndrome suggests allelism with Cowden disease. 9286463 1997
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.400 CausalMutation disease CLINVAR
Entrez Id: 85358
Gene Symbol: SHANK3
SHANK3
0.330 GeneticVariation disease BEFREE Haploinsufficiency of the SHANK3 gene causes a developmental disorder, 22q13.3 deletion syndrome (known as Phelan-McDermid syndrome), that is characterized by severe expressive language and speech delay, hypotonia, global developmental delay, and autistic behavior. 22749736 2013
Entrez Id: 85358
Gene Symbol: SHANK3
SHANK3
0.330 GeneticVariation disease BEFREE Novel variants of the SHANK3 gene in Japanese autistic patients with severe delayed speech development. 21378602 2011
Entrez Id: 85358
Gene Symbol: SHANK3
SHANK3
0.330 Biomarker disease BEFREE We report two children with interstitial deletions of 22q13 and two copies of SHANK3, but clinical features similar to the terminal 22q13 deletion syndrome, including mental retardation and severe speech delay. 18523453 2008
Entrez Id: 85358
Gene Symbol: SHANK3
SHANK3
0.330 Biomarker disease CTD_human Mutations in the gene encoding the synaptic scaffolding protein SHANK3 are associated with autism spectrum disorders. 17173049 2007
Entrez Id: 85358
Gene Symbol: SHANK3
SHANK3
0.330 Biomarker disease CTD_human Identification of a recurrent breakpoint within the SHANK3 gene in the 22q13.3 deletion syndrome. 16284256 2006
Entrez Id: 9378
Gene Symbol: NRXN1
NRXN1
0.320 GeneticVariation disease BEFREE Copy number variants (CNVs) and intragenic rearrangements of the NRXN1 (neurexin 1) gene are associated with a wide spectrum of developmental and neuropsychiatric disorders, including intellectual disability, speech delay, autism spectrum disorders (ASDs), hypotonia and schizophrenia. 22617343 2012
Entrez Id: 1806
Gene Symbol: DPYD
DPYD
0.320 GeneticVariation disease BEFREE Our study suggests that hemizygous deletions involving the DPYD locus present with variable phenotypes which can include speech delay and autistic features, and may also be influenced by additional mutations in other genes, issues which need to be considered in genetic counseling. 21114665 2011
Entrez Id: 1806
Gene Symbol: DPYD
DPYD
0.320 Biomarker disease CTD_human Our study suggests that hemizygous deletions involving the DPYD locus present with variable phenotypes which can include speech delay and autistic features, and may also be influenced by additional mutations in other genes, issues which need to be considered in genetic counseling. 21114665 2011
Entrez Id: 1806
Gene Symbol: DPYD
DPYD
0.320 GeneticVariation disease BEFREE Hemizygous DPYD deletions were previously suggested to contribute to a phenotype with autism spectrum disorder and speech delay. 22003227 2011
Entrez Id: 9378
Gene Symbol: NRXN1
NRXN1
0.320 Biomarker disease CTD_human Molecular pathways involved in neuronal cell adhesion and membrane scaffolding contribute to schizophrenia and bipolar disorder susceptibility. 20157312 2011
Entrez Id: 9378
Gene Symbol: NRXN1
NRXN1
0.320 GeneticVariation disease BEFREE Intragenic rearrangements in NRXN1 in three families with autism spectrum disorder, developmental delay, and speech delay. 20162629 2010
Entrez Id: 93986
Gene Symbol: FOXP2
FOXP2
0.310 Biomarker disease CTD_human Genetic Candidate Variants in Two Multigenerational Families with Childhood Apraxia of Speech. 27120335 2016
Entrez Id: 26040
Gene Symbol: SETBP1
SETBP1
0.310 Biomarker disease CTD_human Refining analyses of copy number variation identifies specific genes associated with developmental delay. 25217958 2014
Entrez Id: 26047
Gene Symbol: CNTNAP2
CNTNAP2
0.310 Biomarker disease CTD_human Molecular pathways involved in neuronal cell adhesion and membrane scaffolding contribute to schizophrenia and bipolar disorder susceptibility. 20157312 2011
Entrez Id: 26047
Gene Symbol: CNTNAP2
CNTNAP2
0.310 Biomarker disease CTD_human CNTNAP2 variants affect early language development in the general population. 21310003 2011
Entrez Id: 26040
Gene Symbol: SETBP1
SETBP1
0.310 GeneticVariation disease BEFREE As rare 18q interstitial deletions affecting multiple genes including SETBP1 correlate with a milder phenotype, including minor physical anomalies and developmental and expressive speech delay, mutations in SETBP1 are thought to result in a gain-of-function or a dominant-negative effect. 21037274 2011
Entrez Id: 26047
Gene Symbol: CNTNAP2
CNTNAP2
0.310 Biomarker disease BEFREE Disruption of CNTNAP2 and additional structural genome changes in a boy with speech delay and autism spectrum disorder. 19582487 2010
Entrez Id: 26047
Gene Symbol: CNTNAP2
CNTNAP2
0.310 Biomarker disease CTD_human Deletion of 7q34-q36.2 in two siblings with mental retardation, language delay, primary amenorrhea, and dysmorphic features. 21082657 2010
Entrez Id: 93986
Gene Symbol: FOXP2
FOXP2
0.310 GeneticVariation disease BEFREE Rare mutations of the FOXP2 transcription factor gene cause a monogenic syndrome characterized by impaired speech development and linguistic deficits. 19304338 2009
Entrez Id: 53335
Gene Symbol: BCL11A
BCL11A
0.300 Biomarker disease CTD_human Genetic Candidate Variants in Two Multigenerational Families with Childhood Apraxia of Speech. 27120335 2016
Entrez Id: 3737
Gene Symbol: KCNA2
KCNA2
0.300 Biomarker disease CTD_human De novo loss- or gain-of-function mutations in KCNA2 cause epileptic encephalopathy. 25751627 2015
Entrez Id: 2077
Gene Symbol: ERF
ERF
0.300 Biomarker disease CTD_human Reduced dosage of ERF causes complex craniosynostosis in humans and mice and links ERK1/2 signaling to regulation of osteogenesis. 23354439 2013
Entrez Id: 2903
Gene Symbol: GRIN2A
GRIN2A
0.300 Biomarker disease CTD_human GRIN2A mutations in acquired epileptic aphasia and related childhood focal epilepsies and encephalopathies with speech and language dysfunction. 23933820 2013