Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3265
Gene Symbol: HRAS
HRAS
0.010 Biomarker disease BEFREE We show that amphiphile-mediated depalmitoylation (AMD) can effectively cleave S-palmitoyl groups from the native GTPase HRas and successfully depalmitoylate mislocalized proteins in an infantile neuronal ceroid lipofuscinosis (INCL) disease model. 30516377 2018
Entrez Id: 6812
Gene Symbol: STXBP1
STXBP1
0.010 Biomarker disease BEFREE Significant alterations in protein expression were identified in each NCL, including reduced STXBP1 in CLN1 disease brain. 28792770 2017
Entrez Id: 825
Gene Symbol: CAPN3
CAPN3
0.010 Biomarker disease BEFREE Infantile neuronal ceroid lipofuscinosis (INCL; NCL1, Haltia-Santavuori disease) is caused by mutations in the CLN1/PPT gene which are associated with an early onset INCL phenotype. 22387303 2012
Entrez Id: 7431
Gene Symbol: VIM
VIM
0.010 Biomarker disease BEFREE Although the clinical and pathological features of the GFAP(-/-)Vimentin(-/-)PPT1(-/-) mice are similar to INCL, the disease appears earlier and progresses more rapidly. 22031903 2011
Entrez Id: 23411
Gene Symbol: SIRT1
SIRT1
0.010 AlteredExpression disease BEFREE We report here that, in cultured INCL fibroblasts and in the brain tissues of Ppt1-KO mice, the NAD(+)/NADH ratio, the levels of phosphorylated-AMPK (p-AMPK), peroxisome proliferator-activated receptor-γ (PPARγ) coactivator-1α (PGC-1α) and Silent Information Regulator T1 (SIRT1) are markedly down-regulated. 21224254 2011
Entrez Id: 6198
Gene Symbol: RPS6KB1
RPS6KB1
0.010 AlteredExpression disease BEFREE Most importantly, resveratrol (RSV), an antioxidant polyphenol, elevated the NAD(+)/NADH ratio, levels of ATP, p-AMPK, PGC-1α and SIRT1 while decreasing the level of p-S6K1 in both INCL fibroblasts and in Ppt1-KO mice, which showed a modest increase in lifespan. 21224254 2011
Entrez Id: 2670
Gene Symbol: GFAP
GFAP
0.010 Biomarker disease BEFREE Although the clinical and pathological features of the GFAP(-/-)Vimentin(-/-)PPT1(-/-) mice are similar to INCL, the disease appears earlier and progresses more rapidly. 22031903 2011
Entrez Id: 1808
Gene Symbol: DPYSL2
DPYSL2
0.010 Biomarker disease BEFREE Protein product of CLN6 gene responsible for variant late-onset infantile neuronal ceroid lipofuscinosis interacts with CRMP-2. 19235893 2009
Entrez Id: 2596
Gene Symbol: GAP43
GAP43
0.010 Biomarker disease BEFREE We also demonstrate that transfection of cultured INCL cells with a green fluorescent protein-GAP-43 cDNA construct shows abnormal localization of this protein in the ER. 16644870 2006
Entrez Id: 836
Gene Symbol: CASP3
CASP3
0.010 Biomarker disease BEFREE Here we report that in the human INCL brain ER stress-induced activation of unfolded protein response (UPR) mediates caspase-4 and caspase-3 activation and apoptosis. 16644870 2006
Entrez Id: 837
Gene Symbol: CASP4
CASP4
0.010 AlteredExpression disease BEFREE Here we report that in the human INCL brain ER stress-induced activation of unfolded protein response (UPR) mediates caspase-4 and caspase-3 activation and apoptosis. 16644870 2006
Entrez Id: 4868
Gene Symbol: NPHS1
NPHS1
0.010 GeneticVariation disease BEFREE In the present study, new PCR-OLA methods were developed for the detection of the major mutations causing infantile neuronal ceroid lipofuscinosis (INCLFin), congenital nephrotic syndrome of Finnish type (NPHS1 FinMajor and FinMinor) and medium chain acyl-CoA dehydrogenase deficiency (MCAD A985G). 11347979 2001
Entrez Id: 6342
Gene Symbol: SCP2
SCP2
0.010 Biomarker disease BEFREE Assignment of sterol carrier protein X/sterol carrier protein 2 to 1p32 and its exclusion as the causative gene for infantile neuronal ceroid lipofuscinosis. 8004106 1994
Entrez Id: 4610
Gene Symbol: MYCL
MYCL
0.010 Biomarker disease BEFREE Here we demonstrate a linkage disequilibrium of CLN1 chromosomes using the two closest markers, DIS62 and L-MYC at the short arm of chromosome 1 (P less than 0.0025). 2071142 1991
Entrez Id: 9374
Gene Symbol: PPT2
PPT2
0.020 GeneticVariation disease BEFREE The palmitoyl protein thioesterase-2 (PPT2) gene encodes a lysosomal thioesterase homologous to PPT1, which is the enzyme defective in the human disorder called infantile neuronal ceroid lipofuscinosis. 14528005 2003
Entrez Id: 9374
Gene Symbol: PPT2
PPT2
0.020 Biomarker disease BEFREE PPT2 is located in the human major histocompatibility class III locus on chromosome 6p21.3, a position that rules out PPT2 as the causative gene in any of the NCLs at defined chromosomal loci. 10051407 1999
Entrez Id: 5536
Gene Symbol: PPP5C
PPP5C
0.040 GeneticVariation disease BEFREE Infantile neuronal ceroid lipofuscinosis (INCL; NCL1, Haltia-Santavuori disease) is caused by mutations in the CLN1/PPT gene which are associated with an early onset INCL phenotype. 22387303 2012
Entrez Id: 6863
Gene Symbol: TAC1
TAC1
0.040 GeneticVariation disease BEFREE Infantile neuronal ceroid lipofuscinosis (INCL; NCL1, Haltia-Santavuori disease) is caused by mutations in the CLN1/PPT gene which are associated with an early onset INCL phenotype. 22387303 2012
Entrez Id: 5536
Gene Symbol: PPP5C
PPP5C
0.040 GeneticVariation disease BEFREE Mutations in the palmitoyl-protein thioesterase (PPT) gene cause infantile neuronal ceroid lipofuscinosis (INCL), the clinical manifestations of which include the early loss of vision followed by deterioration of brain functions. 10231585 1999
Entrez Id: 6863
Gene Symbol: TAC1
TAC1
0.040 GeneticVariation disease BEFREE In a pregnancy at risk for INCL, chorionic villi (CV) were studied using a novel fluorometric PPT enzyme assay in combination with mutation-analysis of the CLN1 gene. 10416973 1999
Entrez Id: 5536
Gene Symbol: PPP5C
PPP5C
0.040 GeneticVariation disease BEFREE In a pregnancy at risk for INCL, chorionic villi (CV) were studied using a novel fluorometric PPT enzyme assay in combination with mutation-analysis of the CLN1 gene. 10416973 1999
Entrez Id: 6863
Gene Symbol: TAC1
TAC1
0.040 GeneticVariation disease BEFREE Mutations in the palmitoyl-protein thioesterase (PPT) gene cause infantile neuronal ceroid lipofuscinosis (INCL), the clinical manifestations of which include the early loss of vision followed by deterioration of brain functions. 10231585 1999
Entrez Id: 5536
Gene Symbol: PPP5C
PPP5C
0.040 GeneticVariation disease BEFREE We pursued the identification of the gene defective in INCL, enriched in the Finnish population by a positional cloning approach and identified mutations in the palmitoyl-protein thioesterase (PPT) gene in INCL patients. 9151310 1997
Entrez Id: 6863
Gene Symbol: TAC1
TAC1
0.040 GeneticVariation disease BEFREE We pursued the identification of the gene defective in INCL, enriched in the Finnish population by a positional cloning approach and identified mutations in the palmitoyl-protein thioesterase (PPT) gene in INCL patients. 9151310 1997
Entrez Id: 23400
Gene Symbol: ATP13A2
ATP13A2
0.300 Biomarker disease CTD_human Characterization of cellular protective effects of ATP13A2/PARK9 expression and alterations resulting from pathogenic mutants. 22847264 2012