Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 2064
Gene Symbol: ERBB2
ERBB2
0.100 Biomarker disease BEFREE "EMERGE" demonstrates differences between HR/HER2 subtypes in clinical outcomes and divergence from evidence-based guideline recommendations for MBC management, especially as it pertains to the HR<sup>+</sup>/HER2<sup>-</sup> patients in which chemotherapy was favored over endocrine therapy in the first line setting. 30658600 2019
Entrez Id: 2064
Gene Symbol: ERBB2
ERBB2
0.100 Biomarker disease BEFREE <b>Conclusion:</b> By 1 d after injection, uptake of <sup>64</sup>Cu-DOTA-trastuzumab in MBC is strongly associated with patient HER2 status and is indicative of binding to HER2. 28637802 2018
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.100 GeneticVariation disease BEFREE <b>Conclusion:</b><i>BRCA1/2</i> mutation profiling to target olaparib use is not a cost-effective strategy for metastatic breast cancer. 31692405 2019
Entrez Id: 1019
Gene Symbol: CDK4
CDK4
0.100 Biomarker disease BEFREE <b>Conclusions:</b> Despite encouraging pre-clinical evidence, there is a lack of clinical data to inform CNS-specific response rates to CDK4/6 inhibitors among patients with metastatic breast cancer. 31695840 2019
Entrez Id: 2064
Gene Symbol: ERBB2
ERBB2
0.100 Biomarker disease BEFREE <b>Conclusions:</b> Palbociclib is effective for HR+/HER2- MBC in real-world practice. 30787127 2019
Entrez Id: 2064
Gene Symbol: ERBB2
ERBB2
0.100 Biomarker disease BEFREE <b>Methods:</b> Genome-wide methylation profiling using the <i>Illumina Infinium HumanMethylation450 BeadChip</i> was performed in archival FFPE specimens of 36 patients with HER2-negative metastatic breast cancer treated with chemotherapy in combination with bevacizumab as first-line therapy (<i>learning set</i>). 29721079 2018
Entrez Id: 2099
Gene Symbol: ESR1
ESR1
0.100 Biomarker disease BEFREE <b>Methods:</b> Patients with ER-positive metastatic breast cancer were eligible for the study, irrespective of tumor AR status. 28912144 2017
Entrez Id: 23583
Gene Symbol: SMUG1
SMUG1
0.080 GeneticVariation disease BEFREE <b>Methods:</b> Patients with bone-dominant MBC were imaged with <sup>18</sup>F-FDG PET and <sup>18</sup>F-NaF PET before starting new therapy (scan1) and again at a range of times centered around approximately 4 mo later (scan2). 29748233 2018
Entrez Id: 2242
Gene Symbol: FES
FES
0.030 Biomarker disease BEFREE <b>Methods:</b><sup>18</sup>F-FES PET on accredited PET/CT camera systems performed in patients with ER-positive metastatic breast cancer November 2009-December 2014 was analyzed. 29602822 2018
Entrez Id: 2099
Gene Symbol: ESR1
ESR1
0.100 Biomarker disease BEFREE <b>Methods:</b><sup>18</sup>F-FES PET on accredited PET/CT camera systems performed in patients with ER-positive metastatic breast cancer November 2009-December 2014 was analyzed. 29602822 2018
Entrez Id: 2099
Gene Symbol: ESR1
ESR1
0.100 Biomarker disease BEFREE <b>Purpose:</b> Evaluate <sup>18</sup>F-fluoroestradiol (FES) PET/CT as a biomarker of estrogen receptor (ER) occupancy and/or downregulation during phase I dose escalation of the novel ER targeting therapeutic GDC-0810 and help select drug dosage for subsequent clinical trials.<b>Experimental Design:</b> In a phase I clinical trial of GDC-0810, patients with ER-positive metastatic breast cancer underwent FES PET/CT before beginning therapy and at cycle 2, day 3 of GDC-0810 therapy. 28011460 2017
Entrez Id: 59286
Gene Symbol: UBL5
UBL5
0.020 Biomarker disease BEFREE <b>Purpose:</b> Preplanned exploratory analyses were performed to identify biomarkers in circulating tumor cells (CTC) predictive of response to the topoisomerase 1 inhibitor etirinotecan pegol (EP).<b>Experimental Design:</b> The BEACON trial treated patients with metastatic breast cancer (MBC) with EP or treatment of physician's choice (TPC). 29618616 2018
Entrez Id: 1019
Gene Symbol: CDK4
CDK4
0.100 Biomarker disease BEFREE <b>Purpose:</b> The phase II MONARCH 1 study was designed to evaluate the single-agent activity and adverse event (AE) profile of abemaciclib, a selective inhibitor of CDK4 and CDK6, in women with refractory hormone receptor-positive (HR<sup>+</sup>), HER2<sup>-</sup> metastatic breast cancer (MBC).<b>Experimental Design:</b> MONARCH 1 was a phase II single-arm open-label study. 28533223 2017
Entrez Id: 4493
Gene Symbol: MT1E
MT1E
0.020 Biomarker disease BEFREE <b>Purpose:</b> We aimed to establish the MTD of the poly (ADP-ribose) (PAR) polymerase inhibitor, veliparib, in combination with carboplatin in germline <i>BRCA1</i>- and <i>BRCA2- (BRCA)</i>-associated metastatic breast cancer (MBC), to assess the efficacy of single-agent veliparib, and of the combination treatment after progression, and to correlate PAR levels with clinical outcome.<b>Experimental Design:</b> Phase I patients received carboplatin (AUC of 5-6, every 21 days), with escalating doses (50-20 mg) of oral twice-daily (BID) veliparib. 28356425 2017
Entrez Id: 4072
Gene Symbol: EPCAM
EPCAM
0.100 Biomarker disease BEFREE <b>Purpose:</b> We profiled circulating tumor cells (CTCs) to study the biology of blood-borne metastasis and to monitor biomarker status in metastatic breast cancer (MBC).<b>Methods:</b> CTCs were isolated from 105 patients with MBC using EPCAM-based immunomagnetic enrichment and fluorescence-activated cells sorting (IE/FACS), 28 of whom had serial CTC analysis (74 samples, 2-5 time points). 29311117 2018
Entrez Id: 768216
Gene Symbol: MIR454
MIR454
0.010 AlteredExpression disease BEFREE <b>Results:</b> The Wnt/β-catenin signaling antagonist RPRD1A was downregulated and its upstream regulator miR-454-3p was amplified and overexpressed in metastatic breast cancer, and both were correlated with overall and relapse-free survival in breast cancer patients. 30809286 2019
Entrez Id: 652995
Gene Symbol: UCA1
UCA1
0.010 AlteredExpression disease BEFREE <b>Results:</b> We observed that TGF-β induced genome-wide changes in lncRNA levels in breast cancer cells, among which AC026904.1 and UCA1 were highly expressed in metastatic breast cancer and closely associated with poor prognosis. 29774079 2018
Entrez Id: 324
Gene Symbol: APC
APC
0.020 Biomarker disease BEFREE <i>Results</i>: SEER*Stat confirmed that the incidence of distant BC increased between 1973 and 2015 (annual percent change [APC] = 0.46). 30965658 2019
Entrez Id: 23583
Gene Symbol: SMUG1
SMUG1
0.080 GeneticVariation disease BEFREE <sup>18</sup>F-FDG PET/CT for the early prediction of the response rate and survival of patients with recurrent or metastatic breast cancer. 30214554 2018
Entrez Id: 23583
Gene Symbol: SMUG1
SMUG1
0.080 Biomarker disease BEFREE 18F-FDG PET/CT in a Case of Metastatic Breast Cancer to the Vulva. 30985415 2019
Entrez Id: 2064
Gene Symbol: ERBB2
ERBB2
0.100 Biomarker disease BEFREE 20.7% of patients had an hormone receptor (HR)-negative MBC, 73.7% had a HER2-negative MBC and 13.9% were classified as triple-negative BC (ie, HER2 and HR status both negative). 30796119 2019
Entrez Id: 2064
Gene Symbol: ERBB2
ERBB2
0.100 Biomarker disease BEFREE 25 studies reported results on HER2-negative mBC, six on TN mBC and two on both subtypes. 29303361 2018
Entrez Id: 2099
Gene Symbol: ESR1
ESR1
0.100 Biomarker disease BEFREE 308 Women with estrogen-receptor-positive metastatic mBC treated with a third-generation AI were identified retrospectively. 22418701 2012
Entrez Id: 2064
Gene Symbol: ERBB2
ERBB2
0.100 Biomarker disease BEFREE 54 HER2MBC patients treated with HER2 targeted therapy as first line treatment were analysed: 40 with a time to progression longer than 3 years in Long Responders (LR) group and 14 with a progression disease within one year of anti-HER2 therapy in a control group named Early Progressors (EP). 30067438 2018
Entrez Id: 2099
Gene Symbol: ESR1
ESR1
0.100 GeneticVariation disease BEFREE Metastatic Breast Cancer With ESR1 Mutation: Clinical Management Considerations From the Molecular and Precision Medicine (MAP) Tumor Board at Massachusetts General Hospital. 27551012 2016