Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 4255
Gene Symbol: MGMT
MGMT
0.040 GeneticVariation disease BEFREE A better prognosis was significantly associated with combined IDH1 mutation and MGMT methylation status (both positive vs both negative, HR 0.079 [95% CI 0.008-0.579], p=0.012), as well as histology (OG vs DA and OA, HR 0.158 [95% CI 0.022-0.674], p=0.011) and tumor size (<6 cm vs ≥6 cm, HR 0.120 [95% CI 0.017-0.595], p=0.008). 26276726 2015
Entrez Id: 4255
Gene Symbol: MGMT
MGMT
0.040 PosttranslationalModification disease BEFREE However, there is only anecdotal information about MGMT methylation status and TP53 mutations during progression of low-grade diffuse astrocytoma (AII) to anaplastic astrocytoma (AIII) and secondary glioblastoma (sGB). 20593220 2011
Entrez Id: 4255
Gene Symbol: MGMT
MGMT
0.040 PosttranslationalModification disease BEFREE In the present study, we analyzed MGMT promoter methylation by the methylation-specific PCR in 49 newly diagnosed WHO grade II astrocytomas and evaluated its clinical usefulness. 12744471 2003
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.020 Biomarker disease BEFREE The analysis of multiple biopsies from the same patients revealed hypermethylation of p14ARF (5/15 cases) and p16INK4a (1/15 cases) already at the stage of low-grade diffuse astrocytoma but consistent absence of homozygous deletions. 11303791 2001
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.020 GeneticVariation disease BEFREE Deletion of CDKN2A and CDKN2B loci was found both in diffuse astrocytoma and glioblastoma component, but no other significant alterations were found. 26404554 2016
Entrez Id: 4603
Gene Symbol: MYBL1
MYBL1
0.020 Biomarker disease BEFREE Recent identification of activating re-arrangements in c-MYB and MYBL1 in pediatric diffuse astrocytoma also provide candidates for therapeutic intervention. 23881924 2013
Entrez Id: 4603
Gene Symbol: MYBL1
MYBL1
0.020 Biomarker disease BEFREE Whole-genome sequencing of a MYBL1-rearranged diffuse astrocytoma grade II demonstrated MYBL1 tandem duplication and few other events. 23633565 2013
Entrez Id: 10215
Gene Symbol: OLIG2
OLIG2
0.010 Biomarker disease BEFREE OLIG - 2 was increased in IDH-mutant grade II astrocytomas and in cases with higher proliferation rate. 29258767 2018
Entrez Id: 3383
Gene Symbol: ICAM1
ICAM1
0.010 GeneticVariation disease BEFREE However, a specific ICAM-1 genotype (G/G, corresponding to Lys469Glu) exhibited higher frequency in grade II astrocytomas compared to controls, grade III, and grade IV astrocytomas; suggesting that this polymorphism could be involved in the development of grade II astrocytomas. 19306055 2009
Entrez Id: 4513
Gene Symbol: COX2
COX2
0.010 Biomarker disease BEFREE The aim of this study was to analyze the methylation status of four critical tumor-associated genes (MGMT, RARbeta, RASSF1A, CDH13), and investigate possible links with inflammatory (interleukin [IL]-6, IL-8) and angiogenic mediators (vascular endothelial growth factor [VEGF], cyclooxygenase [COX]-2) and clinical outcome in 23 glioma samples (6 grade II astrocytomas, 17 grade IV glioblastomas). 19809523 2010
Entrez Id: 11200
Gene Symbol: CHEK2
CHEK2
0.010 AlteredExpression disease BEFREE Based on analyses of human glioblastoma multiforme (GBM) cell lines, normal astrocytes and clinical specimens from grade II astrocytomas (n=41) and grade IV GBM (n=60), we conclude that the DDR machinery is constitutively activated in gliomas, as documented by phosphorylated histone H2AX (gammaH2AX), activation of the ATM-Chk2-p53 pathway, 53BP1 foci and other markers. 20581868 2010
Entrez Id: 5978
Gene Symbol: REST
REST
0.010 AlteredExpression disease BEFREE Means of relative expression for REST were as follows: 0.7898, 0.7606, and 0.7318 in DA, AO, and GBM groups, respectively. 27685921 2017
Entrez Id: 6657
Gene Symbol: SOX2
SOX2
0.010 Biomarker disease BEFREE Double immunostaining for FABP7 and Sox2 showed that FABP7(+) Sox2(+) tumor cells were significantly increased in glioblastoma (grade IV) compared with diffuse astrocytoma (grade II) and anaplastic astrocytoma (grade III). 24274717 2013
Entrez Id: 7040
Gene Symbol: TGFB1
TGFB1
0.010 AlteredExpression disease BEFREE We focused on TGFB1I1 (TGF-β1 induced transcript 1) whose expression correlation with WHO grades was further validated by qPCR in 6 cell lines of different grades and 49 independent samples (36 AIIs and 13 AIIIs). 25333259 2014
Entrez Id: 6574
Gene Symbol: SLC20A1
SLC20A1
0.010 AlteredExpression disease BEFREE Proliferation studies, global native EGFR and phosphorylated EGFR expressions, phosphate transporter type III isoform 1(PiT1) expression and phosphate transport with 99mTc-(V)-DMSA radioligand were performed in G111 (grade II astrocytoma), U-87-MG (grade III astrocytoma) and G152 (grade IV glioblastoma) cells. 25368255 2014
Entrez Id: 3485
Gene Symbol: IGFBP2
IGFBP2
0.010 AlteredExpression disease BEFREE The mean transcript levels of IGFBP-2 and -3 were significantly higher in glioblastomas (GBM) relative to anaplastic astrocytoma (AA), diffuse astrocytoma (DA), and controls whereas IGFBP-5 mRNA was higher in GBM relative to AA and controls (P < 0.05). 20501753 2010
Entrez Id: 3488
Gene Symbol: IGFBP5
IGFBP5
0.010 GeneticVariation disease BEFREE The mean transcript levels of IGFBP-2 and -3 were significantly higher in glioblastomas (GBM) relative to anaplastic astrocytoma (AA), diffuse astrocytoma (DA), and controls whereas IGFBP-5 mRNA was higher in GBM relative to AA and controls (P < 0.05). 20501753 2010
Entrez Id: 8091
Gene Symbol: HMGA2
HMGA2
0.010 AlteredExpression disease BEFREE Expression of HMGA2 protein was significantly higher in glioblastoma multiforme (World Health Organization [WHO] grade IV; P = .007) and anaplastic astrocytoma (WHO grade III; P = .037) than in diffuse astrocytoma (WHO grade II). 24935062 2014
Entrez Id: 488
Gene Symbol: ATP2A2
ATP2A2
0.010 AlteredExpression disease BEFREE Here, we examined ATP2A2 expression in 109 human diffuse astrocytic tumor samples (39 grade II diffuse astrocytoma (DA), 19 grade III anaplastic astrocytoma (AA), 51 grade IV glioblastoma) and its correlation with patient clinicopathologic characteristics. 28339043 2017
Entrez Id: 1755
Gene Symbol: DMBT1
DMBT1
0.010 GeneticVariation disease BEFREE These data indicate that selective loss of the 10q25.3 region, including the DMBT1 gene, is not an initiating event in the genesis of astrocytoma grade II. 14603438 2004
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.010 Biomarker disease BEFREE IHC indicated that the expression of bcl-2 was inversely correlated to the grade of the tumors (i.e more cells were bcl-2 positive in LGA than in GBM) while the expression of bax was unaffected by the grade of the tumor. 11508812 2001
Entrez Id: 546
Gene Symbol: ATRX
ATRX
0.010 GeneticVariation disease BEFREE Furthermore, we observed that most recurrences had a consistent IDH1 and ATRX status with their matched primary tumors and demonstrated the progressive pattern of grade II astrocytoma/oligodendroglial tumors and anaplastic oligoastrocytoma with or without IDH1-R132H. 26918938 2016
Entrez Id: 2833
Gene Symbol: CXCR3
CXCR3
0.010 Biomarker disease BEFREE Strong CXCR3 immunoexpression was observed in 72.7% cases of GBM as compared to 31.8% cases of DA. 27461653 2017
Entrez Id: 4855
Gene Symbol: NOTCH4
NOTCH4
0.010 Biomarker disease BEFREE Conversely, Notch4 increased from astrocytoma grade II to GBM. 24305720 2014
Entrez Id: 8038
Gene Symbol: ADAM12
ADAM12
0.010 Biomarker disease BEFREE The results of immunohistochemistry are in accordance with the results obtained from the RT-PCR, which further demonstrated a mild difference concerning the mRNA concentration of ADAM 12 between similar grades of eight astrocytomas and eight oligodendrogliomas (namely four astrocytomas grade II versus four oligodendrogliomas grade II and four astrocytomas grade III versus four oligodendrogliomas grade III). 23324579 2013