Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 2308
Gene Symbol: FOXO1
FOXO1
0.010 Biomarker group BEFREE <i>Type II collagen</i> (<i>Col2</i>) Cre-<i>Foxo1</i>-knockout and <i>Col2</i>-Cre-<i>Foxo1,3,4</i> triple-knockout mice exhibit growth plate malformation. 31601652 2019
Entrez Id: 9241
Gene Symbol: NOG
NOG
0.010 Biomarker group BEFREE Malformation of bones and joints may result from defects in noggin. 15699718 2005
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.010 Biomarker group BEFREE Bcl-2 is crucial for normal development in the kidney, with a deficiency in Bcl-2 producing such malformation that renal failure and death result. 10361261 1999
Entrez Id: 9618
Gene Symbol: TRAF4
TRAF4
0.010 Biomarker group BEFREE TRAF4 deficiency leads to tracheal malformation with resulting alterations in air flow to the lungs. 10934170 2000
Entrez Id: 3239
Gene Symbol: HOXD13
HOXD13
0.040 Biomarker group BEFREE Synpolydactyly (SPD) is a rare malformation of the distal limbs known to be caused by mutations in HOXD13. 10951517 2000
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.070 Biomarker group BEFREE PAX6 haploinsufficiency causes cerebral malformation and olfactory dysfunction in humans. 11431688 2001
Entrez Id: 170474
Gene Symbol: HFM
HFM
0.030 Biomarker group BEFREE Hemifacial microsomia: progress in understanding the genetic basis of a complex malformation syndrome. 11810276 2001
Entrez Id: 57167
Gene Symbol: SALL4
SALL4
0.010 Biomarker group BEFREE SALL4 represents the first identified Duane syndrome gene and the second malformation syndrome resulting from mutations in SAL genes and likely plays a critical role in abducens motoneuron development. 12395297 2002
Entrez Id: 50964
Gene Symbol: SOST
SOST
0.010 Biomarker group BEFREE Sclerosteosis is a unique autosomal recessive condition in which skeletal overgrowth is associated with syndactyly and digital malformation. 1259284 1976
Entrez Id: 5048
Gene Symbol: PAFAH1B1
PAFAH1B1
0.080 GeneticVariation group BEFREE LIS1 mutations cause a more severe malformation posteriorly. 15816977 2005
Entrez Id: 5048
Gene Symbol: PAFAH1B1
PAFAH1B1
0.080 GeneticVariation group BEFREE LIS1 mutations cause a more severe malformation posteriorly. 15921228 2005
Entrez Id: 3239
Gene Symbol: HOXD13
HOXD13
0.040 GeneticVariation group BEFREE Synpolydactyly (SPD) is an autosomal dominant malformation of the distal limbs caused by mutations in the homeobox gene HOXD13 located on chromosome 2q31. 16497573 2006
Entrez Id: 5048
Gene Symbol: PAFAH1B1
PAFAH1B1
0.080 GeneticVariation group BEFREE LIS1 mutations cause a more severe malformation in the posterior brain regions. 16724181 2006
Entrez Id: 64220
Gene Symbol: STRA6
STRA6
0.010 GeneticVariation group BEFREE STRA6 mutations thus define a pleiotropic malformation syndrome representing the first human phenotype associated with mutations in a gene from the "STRA" group. 17273977 2007
Entrez Id: 791229
Gene Symbol: MACOM
MACOM
0.010 Biomarker group BEFREE Macrophthalmia, colobomatous, with microcornea (MACOM) is proposed as the gene symbol for this malformation linked to 2p23-p16. 17506091 2007
Entrez Id: 2248
Gene Symbol: FGF3
FGF3
0.030 GeneticVariation group BEFREE FGF3 sequence changes were not found in eight unrelated probands with isolated inner ear anomalies or with a cochlear malformation along with auricle and tooth anomalies. 18435799 2008
Entrez Id: 5048
Gene Symbol: PAFAH1B1
PAFAH1B1
0.080 GeneticVariation group BEFREE LIS1-related isolated lissencephaly: spectrum of mutations and relationships with malformation severity. 19667223 2009
Entrez Id: 8481
Gene Symbol: OFD1
OFD1
0.030 Biomarker group BEFREE OFD1 is characterized by malformation of the oral cavity, face, and digits. 19876934 2009
Entrez Id: 170
Gene Symbol: AFA
AFA
0.010 Biomarker group BEFREE Ankyloblepharon filiforme adnatum is a rare malformation, which may appear either in isolation, or with associated findings. 20537081 2010
Entrez Id: 53820
Gene Symbol: RIPPLY3
RIPPLY3
0.020 Biomarker group BEFREE Ripply3-deficient mice exhibit abnormal development of pharyngeal derivatives, including ectopic formation of the thymus and the parathyroid gland, as well as cardiovascular malformation. 21177346 2011
Entrez Id: 6812
Gene Symbol: STXBP1
STXBP1
0.010 Biomarker group BEFREE STXBP1 was screened in a multicenter cohort of 52 patients with early onset epilepsy (first seizure observed before the age of 3 months), no cortical malformation on brain magnetic resonance imaging (MRI), and negative metabolic screening. 21770924 2011
Entrez Id: 6949
Gene Symbol: TCOF1
TCOF1
0.010 Biomarker group BEFREE Tcof1 loss-of-function resulted in fish showing phenotypes similar to those observed in TCS patients, and enabled a further characterization of the mechanisms underlying craniofacial malformation. 22295061 2012
Entrez Id: 3912
Gene Symbol: LAMB1
LAMB1
0.010 Biomarker group BEFREE LAMB1 is localized to the pial basement membrane, suggesting that defective connection between radial glial cells and the pial surface mediated by LAMB1 leads to this malformation. 23472759 2013
Entrez Id: 57465
Gene Symbol: TBC1D24
TBC1D24
0.010 GeneticVariation group BEFREE TBC1D24 mutation associated with focal epilepsy, cognitive impairment and a distinctive cerebro-cerebellar malformation. 23517570 2013
Entrez Id: 26154
Gene Symbol: ABCA12
ABCA12
0.010 GeneticVariation group BEFREE ABCA12 mutations result in defective lipid transport via lamellar granules in the keratinocytes, leading to ichthyosis phenotypes from malformation of the stratum corneum lipid barrier. 23954554 2014