Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 257
Gene Symbol: ALX3
ALX3
0.020 GeneticVariation group BEFREE Frontonasal dysplasia (FND) is a genetically heterogeneous malformation spectrum with marked hypertelorism, broad nasal tip and bifid nose. 24376213 2014
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.050 GeneticVariation group BEFREE CHD7 variants are a well-established cause of CHARGE syndrome, a disabling multi-system malformation disorder that is often associated with deafness, visual impairment and intellectual disability. 26813943 2016
Entrez Id: 7155
Gene Symbol: TOP2B
TOP2B
0.010 GeneticVariation group BEFREE Top2b deletion leads to malformation of photoreceptor outer segments (OSs) and synapses accompanied by dramatic cell loss at late-stage photoreceptor differentiation. 28370415 2017
Entrez Id: 170474
Gene Symbol: HFM
HFM
0.030 Biomarker group BEFREE Hemifacial microsomia (HFM) is the second most common congenital craniofacial malformation. 29551253 2018
Entrez Id: 51266
Gene Symbol: CLEC1B
CLEC1B
0.010 GeneticVariation group BEFREE Clec-2 deletion in mouse platelets led to lung malformation, which caused respiratory failure and neonatal lethality. 29853539 2018
Entrez Id: 25923
Gene Symbol: ATL3
ATL3
0.010 GeneticVariation group BEFREE ATL3 Y192C delays ER-export by reducing the number of ER exit sites, reduces autophagy, fragments the Golgi and causes malformation of the nucleus. 30666337 2019
Entrez Id: 3310
Gene Symbol: HSPA6
HSPA6
0.010 Biomarker group BEFREE HSPA6: A new autosomal recessive candidate gene for the VATER/VACTERL malformation spectrum. 30887706 2019
Entrez Id: 170474
Gene Symbol: HFM
HFM
0.030 Biomarker group BEFREE Hemifacial microsomia (HFM) is a malformation characterized by asymmetric facial growth with mandibular and muscular involvement. 31187673 2019
Entrez Id: 2263
Gene Symbol: FGFR2
FGFR2
0.020 GeneticVariation group BEFREE A Pro253Arg mutation in fibroblast growth factor receptor 2 (Fgfr2) causes skeleton malformation mimicking human Apert syndrome by affecting both chondrogenesis and osteogenesis. 18242159 2008
Entrez Id: 8573
Gene Symbol: CASK
CASK
0.010 GeneticVariation group BEFREE A de novo in-frame deletion of CASK gene causes early onset infantile spasms and supratentorial cerebral malformation in a female patient. 30289607 2018
Entrez Id: 6497
Gene Symbol: SKI
SKI
0.010 GeneticVariation group BEFREE A de novo mutation in DHD domain of SKI causing spina bifida with no craniofacial malformation or intellectual disability. 30883014 2019
Entrez Id: 3800
Gene Symbol: KIF5C
KIF5C
0.010 GeneticVariation group BEFREE A female patient with a de novo missense mutation in KIF5C (c.11465A>C; p.(Glu237Lys)) presented with severe ID, epilepsy, microcephaly and cortical malformation. 24812067 2014
Entrez Id: 4964
Gene Symbol: OFC2
OFC2
0.010 Biomarker group BEFREE A locus in 2p13-p14 (OFC2), in addition to that mapped in 6p23, is involved in nonsyndromic familial orofacial cleft malformation. 9676424 1998
Entrez Id: 347733
Gene Symbol: TUBB2B
TUBB2B
0.020 GeneticVariation group BEFREE A novel mutation in the β-tubulin gene TUBB2B associated with complex malformation of cortical development and deficits in axonal guidance. 22591407 2012
Entrez Id: 53820
Gene Symbol: RIPPLY3
RIPPLY3
0.020 Biomarker group BEFREE A previous study showed that RIPPLY3 contribute to cardiac outflow tract development in mice, however, the relationship between RIPPLY3 and human cardiac malformation has not been reported. 30241482 2018
Entrez Id: 5314
Gene Symbol: PKHD1
PKHD1
0.010 GeneticVariation group BEFREE Abernethy malformation associated with Caroli's syndrome in a patient with a PKHD1 mutation: a case report. 28814334 2017
Entrez Id: 9547
Gene Symbol: CXCL14
CXCL14
0.010 Biomarker group BEFREE Absence of CXCL14 results in the malformation of the neural retina and misprojection of the retinal ganglion neurons. 28095300 2017
Entrez Id: 2706
Gene Symbol: GJB2
GJB2
0.030 GeneticVariation group BEFREE After excluding patients with GJB2 mutations and mitochondrial m.1555A > G and m.3243A > G mutations, subjects for CDH23 mutation analysis were selected according to the following criteria: 1) Sporadic or recessively inherited hearing loss 2) bilateral non-syndromic congenital hearing loss, 3) no cochlear malformation, 4) a poorer hearing level at high frequencies than at low frequencies, and 5) severe or profound hearing loss at higher frequencies. 25963016 2015
Entrez Id: 64072
Gene Symbol: CDH23
CDH23
0.010 GeneticVariation group BEFREE After excluding patients with GJB2 mutations and mitochondrial m.1555A > G and m.3243A > G mutations, subjects for CDH23 mutation analysis were selected according to the following criteria: 1) Sporadic or recessively inherited hearing loss 2) bilateral non-syndromic congenital hearing loss, 3) no cochlear malformation, 4) a poorer hearing level at high frequencies than at low frequencies, and 5) severe or profound hearing loss at higher frequencies. 25963016 2015
Entrez Id: 4780
Gene Symbol: NFE2L2
NFE2L2
0.010 Biomarker group BEFREE After knocking down Nrf2 in zebrafish embryos, the rates of mortality and malformation were markedly increased and the hatching rate was significantly decreased. 31022495 2019
Entrez Id: 2551
Gene Symbol: GABPA
GABPA
0.010 Biomarker group BEFREE After knocking down Nrf2 in zebrafish embryos, the rates of mortality and malformation were markedly increased and the hatching rate was significantly decreased. 31022495 2019
Entrez Id: 26033
Gene Symbol: ATRNL1
ATRNL1
0.010 Biomarker group BEFREE After microinjection of miR-181a-5p mimic and inhibitor, zebrafish malformation type and percentage were prominently increased such as distorted SIV vessels along with reduced venation and abnormal branches by ALP staining. 30784759 2019
Entrez Id: 80150
Gene Symbol: ASRGL1
ASRGL1
0.010 Biomarker group BEFREE After microinjection of miR-181a-5p mimic and inhibitor, zebrafish malformation type and percentage were prominently increased such as distorted SIV vessels along with reduced venation and abnormal branches by ALP staining. 30784759 2019
Entrez Id: 470
Gene Symbol: ATHS
ATHS
0.010 Biomarker group BEFREE After microinjection of miR-181a-5p mimic and inhibitor, zebrafish malformation type and percentage were prominently increased such as distorted SIV vessels along with reduced venation and abnormal branches by ALP staining. 30784759 2019
Entrez Id: 27295
Gene Symbol: PDLIM3
PDLIM3
0.010 Biomarker group BEFREE After microinjection of miR-181a-5p mimic and inhibitor, zebrafish malformation type and percentage were prominently increased such as distorted SIV vessels along with reduced venation and abnormal branches by ALP staining. 30784759 2019