Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.100 Biomarker phenotype BEFREE We retrospectively analyzed the 5mC content of 42 patients with intestinal metaplasia (a precancerous lesion of GC) treated with a COX-2 specific inhibitor Rofecoxib or placebo for 2 years, revealing that the COX-2 inhibitor significantly down-regulated 5mC levels (N=42, P=0.009). 31534549 2019
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 Biomarker phenotype BEFREE Using a monoclonal antibody (PAb1801), nuclear p53 was detected in 22 of 45 (49%) cases of gastric carcinoma, and no staining for p53 was demonstrated in the adjacent normal epithelium, including areas of intestinal metaplasia. 8116572 1994
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.100 AlteredExpression phenotype BEFREE CDX2 expression correlated positively with the degree of IM (p<0.01) and the degree of H pylori induced inflammation (p<0.05). 19251954 2009
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation phenotype BEFREE In patients with chronic gastritis, antral mucosa with high p53AIP1 expression tended to have severe intestinal metaplasia.No mutation was found at p53 codon-46. 18277906 2008
Entrez Id: 4583
Gene Symbol: MUC2
MUC2
0.100 AlteredExpression phenotype BEFREE In contrast, high levels of MUC2 and MUC3 mucin mRNA and immunoreactive protein were found in specimens with intestinal metaplasia. 7780985 1995
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.100 PosttranslationalModification phenotype BEFREE Methylation of the Cdx2 promoter was not observed in intestinal metaplasia, while hypermethylation of part of its promoter was observed in hot dipped and IMC. 23382633 2013
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.100 AlteredExpression phenotype BEFREE Conversely, ectopic CDX2 expression in the stomach of transgenic mice promotes intestinal metaplasia, and CDX2 expression often is seen in intestinal metaplasia in stomach and esophagus. 15825077 2005
Entrez Id: 4583
Gene Symbol: MUC2
MUC2
0.100 AlteredExpression phenotype BEFREE These data indicate that MUC2 mucin is expressed in gastric regenerative epithelium in addition to intestinal metaplasia and intestinal type adenocarcinoma. 10633292 1999
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 Biomarker phenotype BEFREE Numerical aberrations of chromosome 17 and the p53 gene were undetectable both in normal mucosa and in intestinal metaplasia. 8647618 1996
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation phenotype BEFREE Molecular alterations involving microsatellites D5S82 and the CA repeat inside the retinoblastoma gene were more frequent in nonintestinal metaplasia whereas those involving the p53 locus took place in columnar intestinal metaplasia and in low-grade dysplasia. 11232646 2001
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.100 Biomarker phenotype BEFREE We previously generated Cdx2-transgenic mice as model mice for intestinal metaplasia and gastric carcinoma. 25228975 2014
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.100 Biomarker phenotype BEFREE Concerning about the origin of p63/p40 and CDX2, it was suggested that the tumor cells were not derived from ectopic squamous epithelium but from intestinal metaplasia. 30890174 2019
Entrez Id: 4583
Gene Symbol: MUC2
MUC2
0.100 Biomarker phenotype BEFREE Barrett's metaplasia was also associated with a specific MUC gene expression pattern, since the gastric apomucin mRNAs, MUC5AC and MUC6, were expressed in gastric metaplasia, and the intestinal apomucin mRNAs, MUC3, MUC4 and mostly MUC2, in intestinal metaplasia. 11093805 2000
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.100 Biomarker phenotype BEFREE The following on molecular mechanisms of Barrett's esophagus and adenocarcinoma contains commentaries on the mechanism of bile and gastric acid induced damage; the roles of BMP-4 and CDX-2 in the development of intestinal metaplasia; the transcription factors driving intestinalization in Barrett's esophagus; the contribution of bone marrow to metaplasia and adenocarcinoma; activation and inactivation of transcription factors; and a novel study design targeting molecular pathways in Barrett's esophagus. 21950830 2011
Entrez Id: 4583
Gene Symbol: MUC2
MUC2
0.100 Biomarker phenotype BEFREE In gastric tumors, and in early preneoplastic lesions such as intestinal metaplasia, the glycosylation pattern detected in normal stomach is lost and, intestinal mucins, MUC2 and MUC4, can be ectopically detected in the gastric epithelium. 11578953 2001
Entrez Id: 1044
Gene Symbol: CDX1
CDX1
0.100 AlteredExpression phenotype BEFREE In conclusion, these functionally interacting events drive CDX1 expression and contribute to intestinal metaplasia, epithelial dedifferentiation, and carcinogenesis in the human stomach. 22749770 2012
Entrez Id: 1044
Gene Symbol: CDX1
CDX1
0.100 AlteredExpression phenotype BEFREE Ectopic expression of Cdx1 and Cdx2 occurs in both gastric IM as well as in BE. 21075347 2010
Entrez Id: 4583
Gene Symbol: MUC2
MUC2
0.100 AlteredExpression phenotype BEFREE Some nuclear expressions of MUC2 and MUC6 were noted in children without intestinal metaplasia. 25704078 2015
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.100 Biomarker phenotype BEFREE CDX2 is a crucial factor in the development of pre-cancerous lesions such as Barrett's esophagus or intestinal metaplasia in the stomach, and its tumor suppressive role has been investigated in colorectal cancers. 27729732 2016
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.100 Biomarker phenotype BEFREE Previous studies indicated that SOX2, the key transcription factor in gastric differentiation, was downregulated during IM development while CDX2, the pivotal intestine-specific transcription factor was upregulated significantly. 30733645 2019
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 AlteredExpression phenotype BEFREE We have studied the effect of H. pylori infection on apoptosis of the antral epithelium in the presence/absence of intestinal metaplasia and the expression of the p53 oncoprotein. 12655259 2003
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 AlteredExpression phenotype BEFREE Histologically, 52 of the 130 enrolled patients showed intestinal metaplasia type I (IM) (90.4% of these were also HP positive), 47 had HP-related gastritis and 31 were normal. p53 cytosol levels were significantly higher in patients with IM or HP-related gastritis than in normal patients (p = 0.0137 and p = 0.0411, respectively). 11396149 2001
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.100 Biomarker phenotype BEFREE In addition, Cdx2 is sufficient to provoke intestinal metaplasia in the stomach. 20298184 2010
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.100 GeneticVariation phenotype BEFREE The COX-2 1195 G-carrier genotype was also significantly (p = 0.038) associated with the score of endoscopic intestinal metaplasia based on Kyoto classification. 28946145 2017
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.100 Biomarker phenotype BEFREE These patterns of expression have shown that CDX2 is important for the initiation of intestinal metaplasia in the gastric mucosa, but the role of CDX2 in established gastric cancer remains unclear. 16331267 2006