Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 57822
Gene Symbol: GRHL3
GRHL3
0.010 GeneticVariation disease BEFREE Like IRF6 and GRHL3, rare variants in TFAP2A can also lead to syndromic orofacial clefting with lip pits (branchio-oculo-facial syndrome). 26332872 2016
Entrez Id: 160
Gene Symbol: AP2A1
AP2A1
0.010 GeneticVariation disease BEFREE Therefore, it remains unclear if all BOFS mutations result in similar changes to the AP-2α protein or if they each produce specific alterations that underlie the spectrum of phenotypes. 23578821 2013
Entrez Id: 284252
Gene Symbol: KCTD1
KCTD1
0.010 GeneticVariation disease BEFREE KCTD1 inhibits the transactivation of the transcription factor AP-2α (TFAP2A) via its BTB domain, and mutations in TFAP2A cause cutis aplasia in individuals with branchiooculofacial syndrome (BOFS), suggesting a potential overlap in the pathogenesis of SEN syndrome and BOFS. 23541344 2013
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.010 AlteredExpression disease BEFREE TFAP2A has been seen involved in orofacial development in mice; it is located in the NSCLP candidate region 6p24; it codes for a transcription factor which regulates expression of IRF6, a gene implied in NSCLP; finally, it is embroiled in the branchiooculofacial syndrome, that includes clefting as feature. 21781438 2013
Entrez Id: 100130275
Gene Symbol: TFAP2A-AS1
TFAP2A-AS1
0.100 GeneticVariation disease CLINVAR
Entrez Id: 147912
Gene Symbol: SIX5
SIX5
0.300 Biomarker disease CTD_human
Entrez Id: 6495
Gene Symbol: SIX1
SIX1
0.300 Biomarker disease CTD_human
Entrez Id: 2138
Gene Symbol: EYA1
EYA1
0.310 Biomarker disease CTD_human Thymus, kidney and craniofacial abnormalities in Six 1 deficient mice. 12834866 2003
Entrez Id: 2138
Gene Symbol: EYA1
EYA1
0.310 GeneticVariation disease BEFREE In light of these issues, we selected the BOR locus (EYA1) as a possible gene mutation for the BOF syndrome. 10767004 2000
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 AlteredExpression disease BEFREE (2019) use direct reprogramming, epigenetics, and chromatin architecture studies to demonstrate that developmental defects observed in a BOFS patient are caused by reduced expression of TFAP2A in neural crest cells due to the spatial separation of the promoter from its neural crest enhancers. 31051129 2019
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 GeneticVariation disease BEFREE Here, we present a BOFS patient carrying a heterozygous inversion with one breakpoint located within a topologically associating domain (TAD) containing enhancers essential for TFAP2A expression in human neural crest cells (hNCCs). 30982769 2019
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 GeneticVariation disease BEFREE Like IRF6 and GRHL3, rare variants in TFAP2A can also lead to syndromic orofacial clefting with lip pits (branchio-oculo-facial syndrome). 26332872 2016
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 CausalMutation disease CLINVAR A clinical and molecular analysis of branchio-oculo-facial syndrome patients in Russia revealed new mutations in TFAP2A. 25590586 2015
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 GeneticVariation disease BEFREE Direct sequencing of the coding region of the TFAP2A gene revealed missense mutations in four BOFS patients. 25590586 2015
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 GeneticVariation disease BEFREE Branchio-oculo-facial syndrome (BOFS) is a craniofacial disorder caused by TFAP2A mutations. 23307527 2013
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 GeneticVariation disease BEFREE Therefore, it remains unclear if all BOFS mutations result in similar changes to the AP-2α protein or if they each produce specific alterations that underlie the spectrum of phenotypes. 23578821 2013
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 GeneticVariation disease BEFREE KCTD1 inhibits the transactivation of the transcription factor AP-2α (TFAP2A) via its BTB domain, and mutations in TFAP2A cause cutis aplasia in individuals with branchiooculofacial syndrome (BOFS), suggesting a potential overlap in the pathogenesis of SEN syndrome and BOFS. 23541344 2013
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 AlteredExpression disease BEFREE TFAP2A has been seen involved in orofacial development in mice; it is located in the NSCLP candidate region 6p24; it codes for a transcription factor which regulates expression of IRF6, a gene implied in NSCLP; finally, it is embroiled in the branchiooculofacial syndrome, that includes clefting as feature. 21781438 2013
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 GeneticVariation disease BEFREE A mutation in the TFAP2A gene associated with BOFS (heterozygous H384Y in exon 7) was found in both the proband and her mother. 22191992 2012
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 GeneticVariation disease BEFREE We report a 2-month-old boy with bilateral branchial cleft anomalies, low-set ears, and hydronephrosis who tested positive for a mutation in the TFAP2A gene (A256V) implicated in branchio-oculo-facial (BOF) syndrome. 22276601 2012
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 GeneticVariation disease BEFREE Mutations in the TFAP2A gene have been reported in patients with BOFS, prompting phenotype-genotype studies because of the variable clinical spectrum. 21728810 2011
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 GeneticVariation disease BEFREE We also give descriptions of the mutations in the TFAP2A gene in our 2 new patients with BOF syndrome. 21250552 2010
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 GeneticVariation disease BEFREE DNA analysis of the TFAP2A gene associated with BOFS using DNA sequencing detected a mutation [c.763A>G (p.Arg255Gly)] in two unrelated patients. 20358615 2010
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 GeneticVariation disease BEFREE This report expands the ocular phenotypic spectrum of BOFS and adds to the small number of reported TFAP2A mutations. 20461149 2010
Entrez Id: 7020
Gene Symbol: TFAP2A
TFAP2A
0.800 Biomarker disease GENOMICS_ENGLAND Second, we determined that TFAP2A is expressed in the lens, neural retina, nasal process, and epithelial lining of the oral cavity and palatal shelves of human and mouse embryos--sites consistent with the phenotype observed in patients with BOFS. 19685247 2009