Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1809
Gene Symbol: DPYSL3
DPYSL3
0.010 Biomarker disease BEFREE Validated genes included dopa decarboxylase, dopamine beta-hydroxylase, and dihydropyrimidinase-related protein 3, which were decreased in NBFL cells exposed to valproate, and spinocerebellar ataxia 7, which was increased in bipolar disease. 15325126 2004
Entrez Id: 3337
Gene Symbol: DNAJB1
DNAJB1
0.010 Biomarker disease BEFREE Hsp70 and Hsp40 chaperones do not modulate retinal phenotype in SCA7 mice. 15494410 2004
Entrez Id: 171221
Gene Symbol: DNAJB1P1
DNAJB1P1
0.010 Biomarker disease BEFREE Hsp70 and Hsp40 chaperones do not modulate retinal phenotype in SCA7 mice. 15494410 2004
Entrez Id: 3308
Gene Symbol: HSPA4
HSPA4
0.010 AlteredExpression disease BEFREE While co-expression of HSP70 with its co-factor HDJ2 efficiently suppressed mutant ataxin-7 aggregation in transfected cells, they did not prevent either neuronal toxicity or aggregate formation in SCA7 mice. 15494410 2004
Entrez Id: 6314
Gene Symbol: ATXN7
ATXN7
0.800 Biomarker disease BEFREE Significantly, in relation to SCA7, poly(Q)-expanded ataxin-7 gets incorporated into STAGA and, in a dominant-negative manner, inhibits the nucleosomal histone acetylation function of STAGA GCN5 both in vitro and, based on chromatin immunoprecipitation assays, in SCA7 transgenic mice. 15932940 2005
Entrez Id: 6310
Gene Symbol: ATXN1
ATXN1
0.330 Biomarker disease CTD_human The AXH domain of Ataxin-1 mediates neurodegeneration through its interaction with Gfi-1/Senseless proteins. 16122429 2005
Entrez Id: 2672
Gene Symbol: GFI1
GFI1
0.300 Biomarker disease CTD_human The AXH domain of Ataxin-1 mediates neurodegeneration through its interaction with Gfi-1/Senseless proteins. 16122429 2005
Entrez Id: 2648
Gene Symbol: KAT2A
KAT2A
0.020 Biomarker disease BEFREE Significantly, in relation to SCA7, poly(Q)-expanded ataxin-7 gets incorporated into STAGA and, in a dominant-negative manner, inhibits the nucleosomal histone acetylation function of STAGA GCN5 both in vitro and, based on chromatin immunoprecipitation assays, in SCA7 transgenic mice. 15932940 2005
Entrez Id: 10594
Gene Symbol: PRPF8
PRPF8
0.010 GeneticVariation disease BEFREE This paper reviews the published histopathologic findings of patients with retinitis pigmentosa (RP) or an allied disease in whom the responsible gene defect was identified, including 10 cases with dominant RP (cases with mutations in RHO, PRPC8, and RP1), three with dominant spinocerebellar ataxia (SCA7), three X-linked RP carrier females (RPGR), two with congenital retinal blindness (AIPL1 and RPE65), two with mitochondrial encephalomyopathy overlap syndrome (MTTL1), and one case each with dominant cone degeneration (GCAP1), X-linked cone degeneration (RCP), enhanced S-cone syndrome (NR2E3), and dominant late-onset retinal degeneration (CTRP5). 16020312 2005
Entrez Id: 6121
Gene Symbol: RPE65
RPE65
0.010 GeneticVariation disease BEFREE This paper reviews the published histopathologic findings of patients with retinitis pigmentosa (RP) or an allied disease in whom the responsible gene defect was identified, including 10 cases with dominant RP (cases with mutations in RHO, PRPC8, and RP1), three with dominant spinocerebellar ataxia (SCA7), three X-linked RP carrier females (RPGR), two with congenital retinal blindness (AIPL1 and RPE65), two with mitochondrial encephalomyopathy overlap syndrome (MTTL1), and one case each with dominant cone degeneration (GCAP1), X-linked cone degeneration (RCP), enhanced S-cone syndrome (NR2E3), and dominant late-onset retinal degeneration (CTRP5). 16020312 2005
Entrez Id: 2978
Gene Symbol: GUCA1A
GUCA1A
0.010 Biomarker disease BEFREE This paper reviews the published histopathologic findings of patients with retinitis pigmentosa (RP) or an allied disease in whom the responsible gene defect was identified, including 10 cases with dominant RP (cases with mutations in RHO, PRPC8, and RP1), three with dominant spinocerebellar ataxia (SCA7), three X-linked RP carrier females (RPGR), two with congenital retinal blindness (AIPL1 and RPE65), two with mitochondrial encephalomyopathy overlap syndrome (MTTL1), and one case each with dominant cone degeneration (GCAP1), X-linked cone degeneration (RCP), enhanced S-cone syndrome (NR2E3), and dominant late-onset retinal degeneration (CTRP5). 16020312 2005
Entrez Id: 6314
Gene Symbol: ATXN7
ATXN7
0.800 Biomarker disease MGD Bergmann glia expression of polyglutamine-expanded ataxin-7 produces neurodegeneration by impairing glutamate transport. 16936724 2006
Entrez Id: 6314
Gene Symbol: ATXN7
ATXN7
0.800 Biomarker disease MGD In conclusion, we describe here a set of events accounting for SCA7 pathogenesis in the retina, in which polyQ-expanded ATXN7 deregulated TFTC/STAGA recruitment to a subset of genes specifically expressed in rod photoreceptors, leading to chromatin alterations and consequent progressive loss of rod photoreceptor function. 16494529 2006
Entrez Id: 6507
Gene Symbol: SLC1A3
SLC1A3
0.010 Biomarker disease BEFREE Expression of the Bergmann glia-specific glutamate transporter GLAST was reduced in Gfa2-SCA7 mice and was associated with impaired glutamate transport in cultured Bergmann glia, cerebellar slices and cerebellar synaptosomes. 16936724 2006
Entrez Id: 6314
Gene Symbol: ATXN7
ATXN7
0.800 Biomarker disease BEFREE The size of the expansion was determined using a fluorescent PCR approach in 10 common SCA genes: SCA-1 (ATXN1), SCA-2 (ATXN2), SCA-3 (ATXN3), SCA-6 (CACNA1A), SCA-7 (ATXN7), SCA-8 (ATXN8OS), SCA-10 (ATXN10), SCA-12 (PPP2R2B), SCA-17 (TBP) and DRPLA (ATN1), in 165 ataxia patients and 307 controls of Welsh origin. 17961920 2007
Entrez Id: 6314
Gene Symbol: ATXN7
ATXN7
0.800 Biomarker disease BEFREE Possibilities of hereditary ataxias, including SCA1 (ataxin 1, ATXN1), SCA2 (ATXN2), Machado-Joseph disease/SCA3 (ATXN1), SCA6 (ATXN1), SCA7 (ATXN7), SCA12 (protein phosphatase 2, regulatory subunit B, beta isoform; PP2R2B), SCA17 (TATA box binding protein, TBP) and DRPLA (atrophin 1; ATN1), were excluded, and no mutations in the alpha-synuclein gene were found. 17420317 2007
Entrez Id: 6314
Gene Symbol: ATXN7
ATXN7
0.800 AlteredExpression disease BEFREE We have created a conditional Drosophila model of SCA7 in which expression of truncated ATXN7 (ATXN7T) with a pathogenic polyQ expansion is induced in neurons in adult flies. 17344386 2007
Entrez Id: 6310
Gene Symbol: ATXN1
ATXN1
0.330 Biomarker disease CTD_human Duplication of Atxn1l suppresses SCA1 neuropathology by decreasing incorporation of polyglutamine-expanded ataxin-1 into native complexes. 17322884 2007
Entrez Id: 773
Gene Symbol: CACNA1A
CACNA1A
0.310 Biomarker disease CTD_human The P/Q-type voltage-dependent calcium channel as pharmacological target in spinocerebellar ataxia type 6: gabapentin and pregabalin may be of therapeutic benefit. 16899342 2007
Entrez Id: 146057
Gene Symbol: TTBK2
TTBK2
0.300 Biomarker disease CTD_human Mutations in TTBK2, encoding a kinase implicated in tau phosphorylation, segregate with spinocerebellar ataxia type 11. 18037885 2007
Entrez Id: 342371
Gene Symbol: ATXN1L
ATXN1L
0.300 Therapeutic disease CTD_human Duplication of Atxn1l suppresses SCA1 neuropathology by decreasing incorporation of polyglutamine-expanded ataxin-1 into native complexes. 17322884 2007
Entrez Id: 6314
Gene Symbol: ATXN7
ATXN7
0.800 Biomarker disease BEFREE We expect that further study of ataxin-7 normal function, insights into the molecular basis of SCA7 neurodegeneration, and the development of therapeutic interventions for SCA7 will greatly influence related endeavors directed at other CAG/polyQ repeat diseases. 18418675 2008
Entrez Id: 6310
Gene Symbol: ATXN1
ATXN1
0.330 Biomarker disease CTD_human Opposing effects of polyglutamine expansion on native protein complexes contribute to SCA1. 18337722 2008
Entrez Id: 5521
Gene Symbol: PPP2R2B
PPP2R2B
0.300 Biomarker disease CTD_human The spinocerebellar ataxia 12 gene product and protein phosphatase 2A regulatory subunit Bbeta2 antagonizes neuronal survival by promoting mitochondrial fission. 18940801 2008
Entrez Id: 23152
Gene Symbol: CIC
CIC
0.300 Biomarker disease CTD_human Opposing effects of polyglutamine expansion on native protein complexes contribute to SCA1. 18337722 2008