Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 182
Gene Symbol: JAG1
JAG1
0.010 AlteredExpression disease BEFREE NOTCH1 expression in ST-EPN was correlated with the CSCs markers VEGFA and L1CAM overexpression and JAG1 expression was correlated with the CCND1 and CDK6 overexpression. 31308481 2019
Entrez Id: 1813
Gene Symbol: DRD2
DRD2
0.010 Biomarker disease BEFREE Receptor overexpression in rare cancers included 5-HTR1B in nasopharyngeal carcinoma (17%), DRD1 in ependymoma (30%) and synovial sarcoma (21%), and DRD2 in astrocytoma (13%). 31478179 2019
Entrez Id: 6833
Gene Symbol: ABCC8
ABCC8
0.010 Biomarker disease BEFREE SUR1 colocalized most reliably with the neuronal marker, NeuN, in glioblastoma, metastases, and posterior fossa ependymoma samples (p < 0.05). 30079884 2019
Entrez Id: 3897
Gene Symbol: L1CAM
L1CAM
0.010 AlteredExpression disease BEFREE NOTCH1 expression in ST-EPN was correlated with the CSCs markers VEGFA and L1CAM overexpression and JAG1 expression was correlated with the CCND1 and CDK6 overexpression. 31308481 2019
Entrez Id: 3714
Gene Symbol: JAG2
JAG2
0.010 AlteredExpression disease BEFREE We found that among the ST-EPN subgroups the Notch signaling (NOTCH1, JAG1, JAG2, and HES4) is specifically activated in the ST-EPN-RELA. 31308481 2019
Entrez Id: 3351
Gene Symbol: HTR1B
HTR1B
0.010 Biomarker disease BEFREE Receptor overexpression in rare cancers included 5-HTR1B in nasopharyngeal carcinoma (17%), DRD1 in ependymoma (30%) and synovial sarcoma (21%), and DRD2 in astrocytoma (13%). 31478179 2019
Entrez Id: 407006
Gene Symbol: MIR221
MIR221
0.010 AlteredExpression disease BEFREE Low-expression of miR-221, miR-9, and miR-181c/d and over-expression of miR-101, miR-222, miR-139, miR-1827, and miR-34c was found in medulloblastoma; low expression of miR-10a and over-expression of miR-10b and miR-29a in ependymoma; low expression of miR-26a and overexpression of miR-19a/b, miR-24, miR-27a, miR- 584, and miR-527 in low-grade glioma. 29658967 2019
Entrez Id: 6622
Gene Symbol: SNCA
SNCA
0.010 Biomarker disease BEFREE A second resection was performed for the mass, which pathological examination revealed an ependymoma with focal anaplasia and additional unusual features including an infiltrative growth pattern and intermixed α-synuclein positivity with electron microscopy finding of LB-like inclusions. 30409527 2019
Entrez Id: 10381
Gene Symbol: TUBB3
TUBB3
0.010 GeneticVariation disease BEFREE This ependymoma cohort showed minimal alterations in gene amplifications and mutations but had high expression rates of DNA synthesis and repair enzymes such as RRM1 (47%), ERCC1 (48%), TOPO1 (62%) and class III β-tublin (TUBB3) (57%), which are also all associated with chemoresistance. 29487694 2018
Entrez Id: 8000
Gene Symbol: PSCA
PSCA
0.010 AlteredExpression disease BEFREE In brain tumors, PSCA was expressed in medulloblastoma and glioma, and its expression was also observed in papilloma and papillary carcinoma of the choroid plexus, ependymoma and meningioma. 29435040 2018
Entrez Id: 2067
Gene Symbol: ERCC1
ERCC1
0.010 GeneticVariation disease BEFREE This ependymoma cohort showed minimal alterations in gene amplifications and mutations but had high expression rates of DNA synthesis and repair enzymes such as RRM1 (47%), ERCC1 (48%), TOPO1 (62%) and class III β-tublin (TUBB3) (57%), which are also all associated with chemoresistance. 29487694 2018
Entrez Id: 2688
Gene Symbol: GH1
GH1
0.010 Biomarker disease BEFREE The fifth patient was a 25-year-old woman, who had intermittently received GH replacement therapy (GHRT) from age 11 to 18, who developed an ependymoma extending from the fourth ventricle to the end of the thoracic spine. 29571594 2018
Entrez Id: 102724428
Gene Symbol: SIK1B
SIK1B
0.010 AlteredExpression disease BEFREE <i>ROS1</i> fusions in primary glioma and ependymoma were independently corroborated from MSK-IMPACT and Foundation Medicine clinical datasets. 30171048 2018
Entrez Id: 960
Gene Symbol: CD44
CD44
0.010 AlteredExpression disease BEFREE Prognostic and microRNA profile analysis for CD44 positive expression pediatric posterior fossa ependymoma. 29704232 2018
Entrez Id: 5159
Gene Symbol: PDGFRB
PDGFRB
0.010 Biomarker disease BEFREE Axitinib's antitumor mechanism in EPN cell lines involved inhibition of PDGFRα and PDGFRβ and was associated with reduced mitosis-related gene expression and cellular senescence. 29925527 2018
Entrez Id: 5156
Gene Symbol: PDGFRA
PDGFRA
0.010 Biomarker disease BEFREE Axitinib's antitumor mechanism in EPN cell lines involved inhibition of PDGFRα and PDGFRβ and was associated with reduced mitosis-related gene expression and cellular senescence. 29925527 2018
Entrez Id: 6240
Gene Symbol: RRM1
RRM1
0.010 GeneticVariation disease BEFREE This ependymoma cohort showed minimal alterations in gene amplifications and mutations but had high expression rates of DNA synthesis and repair enzymes such as RRM1 (47%), ERCC1 (48%), TOPO1 (62%) and class III β-tublin (TUBB3) (57%), which are also all associated with chemoresistance. 29487694 2018
Entrez Id: 150094
Gene Symbol: SIK1
SIK1
0.010 AlteredExpression disease BEFREE <i>ROS1</i> fusions in primary glioma and ependymoma were independently corroborated from MSK-IMPACT and Foundation Medicine clinical datasets. 30171048 2018
Entrez Id: 7291
Gene Symbol: TWIST1
TWIST1
0.010 Biomarker disease BEFREE Immunohistochemistry performed in 60 of the above cases corroborated with gene expression patterns, and immunopositivity for Snail, Slug, Zeb1, and Twist1 was observed in 80%, 80%, 81%, and 63% of all EPNs. 30067950 2018
Entrez Id: 5015
Gene Symbol: OTX2
OTX2
0.010 Biomarker disease BEFREE Unlike other ependymomas, PFA-2c tumors express high levels of OTX2, a potential biomarker for this ependymoma subtype with a good prognosis. 29909548 2018
Entrez Id: 4691
Gene Symbol: NCL
NCL
0.010 Biomarker disease BEFREE Furthermore, through our approach, the majority of currently proposed markers for ependymoma (e.g. nucleolin, nestin, Ki67 and laminin subunit A2) as well as all major key players of the phosphoinositide 3-kinase pathway (seemingly implicated in ependymoma), were definitely detected. 28387652 2017
Entrez Id: 10481
Gene Symbol: HOXB13
HOXB13
0.010 Biomarker disease BEFREE Both specificity and sensitivity of HOXB13 in MEPN indicated that HOXB13 might be a diagnostic marker to distinguish MEPN from other 2 types of EPN and a promising therapeutic target for MEPN. 25785959 2017
Entrez Id: 811
Gene Symbol: CALR
CALR
0.010 Biomarker disease BEFREE The average normal brain doses for PBT, 3D-CRT, and IMRT were 5.1-34.8% (median 14.9%), 11.0-48.5% (23.8%), and 11.5-53.1% (23.5%), respectively, in ependymoma cases; and 42.3-61.2% (48.9%), 54.5-74.0% (62.8%), and 56.3-72.1% (61.2%), respectively, in germinoma cases. 28228150 2017
Entrez Id: 6535
Gene Symbol: SLC6A8
SLC6A8
0.010 Biomarker disease BEFREE The average normal brain doses for PBT, 3D-CRT, and IMRT were 5.1-34.8% (median 14.9%), 11.0-48.5% (23.8%), and 11.5-53.1% (23.5%), respectively, in ependymoma cases; and 42.3-61.2% (48.9%), 54.5-74.0% (62.8%), and 56.3-72.1% (61.2%), respectively, in germinoma cases. 28228150 2017
Entrez Id: 2261
Gene Symbol: FGFR3
FGFR3
0.010 AlteredExpression disease BEFREE FGFR1 and FGFR3 expression levels were detected in ependymoma and pilocytic astrocytoma tissues using immunohistochemistry. 28468611 2017