Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 9260
Gene Symbol: PDLIM7
PDLIM7
0.020 AlteredExpression disease BEFREE LMP1 mRNA, expressed in latencies II and III, was present in three cases of PEL, although at very low levels that were not detectable at the protein level by immunohistochemistry. 9242551 1997
Entrez Id: 6382
Gene Symbol: SDC1
SDC1
0.020 AlteredExpression disease BEFREE The CD138/syndecan-1 isoform expressed by PEL has an average molecular weight of 420 kD, which is substantially different from that of CD138/syndecan-1 molecules generally expressed by plasma cells. 9389706 1997
Entrez Id: 4609
Gene Symbol: MYC
MYC
0.080 GeneticVariation disease BEFREE The PELs share several features with acquired immunodeficiency syndrome (AIDS)-associated primary central nervous system lymphomas (1 degree CNS-L), including B-cell phenotype, infection with Epstein-Barr virus, and lack of c-myc gene rearrangements. 9484350 1998
Entrez Id: 4609
Gene Symbol: MYC
MYC
0.080 Biomarker disease BEFREE These findings suggest that there may be an additional subcategory of primary effusion lymphoma that is not associated with HHV8 nor c-MYC(R) but is pathogenetically associated with the PAX-5 gene or hepatitis C virus. 9850179 1998
Entrez Id: 5079
Gene Symbol: PAX5
PAX5
0.010 Biomarker disease BEFREE These findings suggest that there may be an additional subcategory of primary effusion lymphoma that is not associated with HHV8 nor c-MYC(R) but is pathogenetically associated with the PAX-5 gene or hepatitis C virus. 9850179 1998
Entrez Id: 604
Gene Symbol: BCL6
BCL6
0.030 GeneticVariation disease BEFREE Since BCL6 mutations are regarded as a genetic marker of B-cell transition through the germinal center (GC), these data are consistent with histogenetic derivation of PEL from GC or post-GC B-cells. 9892104 1999
Entrez Id: 6382
Gene Symbol: SDC1
SDC1
0.020 Biomarker disease BEFREE Using these mAbs, we have demonstrated that: (a) tumour cells from PEL expressed a syndecan-1 isoform with a higher molecular weight than that present on malignant plasma cells; (b) syndecan-1 expressed by PEL cells had a core protein identical in size to that expressed by plasma cells, suggesting that differences in syndecan-1 size were due to different GAG chains attached to an identical protein backbone; (c) the PEL-specific isoform of syndecan-1, which probably represented the major proteoglycan expressed by these cells, was effective in mediating cell adhesion to type I collagen substrates. 10027728 1999
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.100 Biomarker disease BEFREE Anti-IL6 neutralizing antibodies had no effect on PEL cell line proliferation; conversely, whereas anti-IL6R alone inhibited only weakly, anti-gp130 and anti-gp130 plus anti-IL6R showed strong inhibitory effects (>20% inhibition in 5/9 lines and >60% inhibition in 3/9 lines). 10214873 1999
Entrez Id: 10148
Gene Symbol: EBI3
EBI3
0.010 Biomarker disease BEFREE In addition, we tested the response of the PEL cells to selected cytokines and the effects of neutralizing anti-cytokine and anti-cytokine receptor antibodies. 10214873 1999
Entrez Id: 8809
Gene Symbol: IL18R1
IL18R1
0.010 Biomarker disease BEFREE In addition, we tested the response of the PEL cells to selected cytokines and the effects of neutralizing anti-cytokine and anti-cytokine receptor antibodies. 10214873 1999
Entrez Id: 3976
Gene Symbol: LIF
LIF
0.010 AlteredExpression disease BEFREE Using specific ELISAs, PEL cell lines were found to produce large amounts of interleukin-6 (IL-6; 10-5000 pg/ml), IL-6 soluble receptor (IL-6sR; 30-600 pg/ml), IL-10 (600-80,000 pg/ml) and oncostatin M (OSM; 50-80 pg/ml) which in most cases were significantly higher than the levels produced by the Burkitt, B-NHL or myeloma cell lines; on the contrary, PEL cell lines did not elaborate significant levels of macrophage inhibitory protein (MIP-1alpha) and leukemia inhibitory factor (LIF). 10214873 1999
Entrez Id: 96610
Gene Symbol: BMS1P20
BMS1P20
0.010 Biomarker disease BEFREE Immunoglobulin V region gene use and structure suggest antigen selection in AIDS-related primary effusion lymphomas. 10400426 1999
Entrez Id: 943
Gene Symbol: TNFRSF8
TNFRSF8
0.030 Biomarker disease BEFREE Establishing and characterizing a CD30-positive cell line harboring HHV-8 from a primary effusion lymphoma. 10421407 1999
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.100 Biomarker disease BEFREE To investigate whether HHV-8 may contribute to PEL development in the absence of EBV, the expression of seven potentially oncogenic HHV-8 open reading frames (ORFs) (ORF72/viral cyclin D, ORF16/viral bcl-2, ORF74/viral G-protein coupled receptor, ORFK2/viral IL-6, ORFK13/viral FLICE inhibitory protein, ORFK9/viral interferon regulatory factor, and ORFK1, equivalent to the gene encoding herpesvirus saimiri transforming protein) was assessed by reverse transcriptase-polymerase chain reaction (RT-PCR) in an EBV-negative PEL presenting in an HIV-negative patient. 10547588 1999
Entrez Id: 841
Gene Symbol: CASP8
CASP8
0.020 Biomarker disease BEFREE To investigate whether HHV-8 may contribute to PEL development in the absence of EBV, the expression of seven potentially oncogenic HHV-8 open reading frames (ORFs) (ORF72/viral cyclin D, ORF16/viral bcl-2, ORF74/viral G-protein coupled receptor, ORFK2/viral IL-6, ORFK13/viral FLICE inhibitory protein, ORFK9/viral interferon regulatory factor, and ORFK1, equivalent to the gene encoding herpesvirus saimiri transforming protein) was assessed by reverse transcriptase-polymerase chain reaction (RT-PCR) in an EBV-negative PEL presenting in an HIV-negative patient. 10547588 1999
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.020 Biomarker disease BEFREE To investigate whether HHV-8 may contribute to PEL development in the absence of EBV, the expression of seven potentially oncogenic HHV-8 open reading frames (ORFs) (ORF72/viral cyclin D, ORF16/viral bcl-2, ORF74/viral G-protein coupled receptor, ORFK2/viral IL-6, ORFK13/viral FLICE inhibitory protein, ORFK9/viral interferon regulatory factor, and ORFK1, equivalent to the gene encoding herpesvirus saimiri transforming protein) was assessed by reverse transcriptase-polymerase chain reaction (RT-PCR) in an EBV-negative PEL presenting in an HIV-negative patient. 10547588 1999
Entrez Id: 9260
Gene Symbol: PDLIM7
PDLIM7
0.020 Biomarker disease BEFREE Fifteen EBV positive PEL (12 AIDS-related, one post-transplant, two arising in immunocompetent hosts) were subjected to molecular characterization of the viral genes EBNA-1 and LMP-1, as well as definition of EBV type-1/type-2. 10673744 2000
Entrez Id: 3082
Gene Symbol: HGF
HGF
0.030 Biomarker disease BEFREE By using a combination of immunological and biological assays, production and secretion of a functional HGF species was identified in all PEL cell lines analyzed. 10673746 2000
Entrez Id: 4233
Gene Symbol: MET
MET
0.030 AlteredExpression disease BEFREE The Met protein expressed by PEL displays biochemical characteristics typical of Met expressed by other cell types and is capable of tyrosine autophosphorylation. 10673746 2000
Entrez Id: 4914
Gene Symbol: NTRK1
NTRK1
0.020 AlteredExpression disease BEFREE The tyrosine kinase receptor met and its ligand HGF are co-expressed and functionally active in HHV-8 positive primary effusion lymphoma. 10673746 2000
Entrez Id: 1719
Gene Symbol: DHFR
DHFR
0.010 AlteredExpression disease BEFREE We have studied the purified KSHV-DHFR enzyme in vitro and analyzed its expression in cultured B-cell lines derived from primary effusion lymphoma (PEL), an AIDS-associated malignancy. 10683342 2000
Entrez Id: 3082
Gene Symbol: HGF
HGF
0.030 AlteredExpression disease BEFREE To clarify the pathogenesis and histogenesis of PEL by investigating (1) the lymphoma karyotype; (2) the expression status of the Met tyrosine kinase receptor and of its ligand hepatocyte growth factor (HGF); (3) the molecular profile of EBV, with particular focus on mutations of EBNA-1 genes, which are thought to affect viral tumorigenicity in EBV-infected neoplasms displaying the latency I phenotype. 10738140 2000
Entrez Id: 4914
Gene Symbol: NTRK1
NTRK1
0.020 AlteredExpression disease BEFREE To clarify the pathogenesis and histogenesis of PEL by investigating (1) the lymphoma karyotype; (2) the expression status of the Met tyrosine kinase receptor and of its ligand hepatocyte growth factor (HGF); (3) the molecular profile of EBV, with particular focus on mutations of EBNA-1 genes, which are thought to affect viral tumorigenicity in EBV-infected neoplasms displaying the latency I phenotype. 10738140 2000
Entrez Id: 5111
Gene Symbol: PCNA
PCNA
0.020 AlteredExpression disease BEFREE We provide evidence here that the cyclin protein is expressed in HHV8 positive primary effusion lymphoma (PEL)-derived cell lines and that its level of expression varies greatly between different lines. 10873769 2000
Entrez Id: 611
Gene Symbol: OPN1SW
OPN1SW
0.010 Biomarker disease BEFREE Viral supernatant from JSC-1 was much more efficient at infecting primary human dermal microvascular endothelial cells (DMVECs) with KSHV than supernatants from BC-3 or BCP-1 PEL cell lines. 11024147 2000