Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 9242
Gene Symbol: MSC
MSC
0.010 AlteredExpression disease BEFREE PEL overexpressed the E2A antagonists ABF-1 and Id2, which have been described to block the B-cell differentiation program in classical HL. 17456056 2007
Entrez Id: 3662
Gene Symbol: IRF4
IRF4
0.040 AlteredExpression disease BEFREE Primary effusion lymphoma (PEL), strongly linked with latent infection of Kaposi's sarcoma-associated herpesvirus (KSHV), constitutively expresses cellular interferon regulatory factor 4 (IRF4) while suppressing the expression of B cell lymphoma 6 (BCL6). 29397940 2018
Entrez Id: 604
Gene Symbol: BCL6
BCL6
0.030 AlteredExpression disease BEFREE Primary effusion lymphoma (PEL), strongly linked with latent infection of Kaposi's sarcoma-associated herpesvirus (KSHV), constitutively expresses cellular interferon regulatory factor 4 (IRF4) while suppressing the expression of B cell lymphoma 6 (BCL6). 29397940 2018
Entrez Id: 96610
Gene Symbol: BMS1P20
BMS1P20
0.010 Biomarker disease BEFREE Immunoglobulin V region gene use and structure suggest antigen selection in AIDS-related primary effusion lymphomas. 10400426 1999
Entrez Id: 4332
Gene Symbol: MNDA
MNDA
0.010 AlteredExpression disease BEFREE MNDA transcript was undetectable in three PEL cell lines by reverse-transcription polymerase chain reaction, but it was induced by interferon alpha (IFNalpha). 14618084 2003
Entrez Id: 4048
Gene Symbol: LTA4H
LTA4H
0.010 AlteredExpression disease BEFREE Leukotriene A4 hydrolase expression in PEL cells is regulated at the transcriptional level and leads to increased leukotriene B4 production. 16709867 2006
Entrez Id: 7345
Gene Symbol: UCHL1
UCHL1
0.010 AlteredExpression disease BEFREE UCH-L1 expression was also increased in Primary Effusion Lymphoma (PEL) cells co-infected with KSHV and EBV compared with PEL cells infected only with KSHV, suggesting EBV augments the effect of LANA on uch-l1. 24314660 2014
Entrez Id: 3654
Gene Symbol: IRAK1
IRAK1
0.010 Biomarker disease BEFREE IRAK1 was constitutively phosphorylated in PEL and required for survival, implicating IRAK1 and TLR signaling as a driver pathway in PEL and as a new drug development target. 25341731 2014
Entrez Id: 885
Gene Symbol: CCK
CCK
0.010 Biomarker disease BEFREE CCK-8 assays were performed to demonstrate that the proliferations of PEL cells were efficiently inhibited by triptolide in a dose- and time-dependent manner. 26821279 2016
Entrez Id: 9260
Gene Symbol: PDLIM7
PDLIM7
0.020 AlteredExpression disease BEFREE LMP1 mRNA, expressed in latencies II and III, was present in three cases of PEL, although at very low levels that were not detectable at the protein level by immunohistochemistry. 9242551 1997
Entrez Id: 639
Gene Symbol: PRDM1
PRDM1
0.020 PosttranslationalModification disease BEFREE A tandem 10-base pair duplication (5'-GCTGAGTTTG-3') was found in exon 2 of the BLIMP1 gene in primary effusion B-cell lymphoma. 17213024 2007
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.070 AlteredExpression disease BEFREE All of the KSHV-infected cell lines (derived from PEL) expressed higher levels of B-Raf and VEGF-A when compared with uninfected cells. 15705790 2005
Entrez Id: 6774
Gene Symbol: STAT3
STAT3
0.060 AlteredExpression disease LHGDN Although STAT3 activation is known to induce expression of Bcl-2 family proteins, PEL cell apoptosis was independent of Bcl-2, Bcl-X(L), or Mcl-1 protein expression. 12393476 2003
Entrez Id: 6774
Gene Symbol: STAT3
STAT3
0.060 AlteredExpression disease BEFREE Although STAT3 activation is known to induce expression of Bcl-2 family proteins, PEL cell apoptosis was independent of Bcl-2, Bcl-X(L), or Mcl-1 protein expression. 12393476 2003
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.020 GeneticVariation disease BEFREE Although detected at a higher frequency in primary effusion lymphoma cell lines than in primary primary effusion lymphoma tumors, TP53 and/or PTEN mutations, as well as deletion of CDKN2A-ARF locus are uncommon in primary effusion lymphoma, and are found to correlate with the EBV-negative status of primary effusion lymphoma tumors. 19608668 2009
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.100 AlteredExpression disease BEFREE Although we found the production of VEGF and IL-6, and the expression of IL-6Rα in PEL cell lines, bevacizumab and tocilizumab did not inhibit the proliferation of PEL cells in vitro. 25304617 2015
Entrez Id: 3570
Gene Symbol: IL6R
IL6R
0.010 AlteredExpression disease BEFREE Although we found the production of VEGF and IL-6, and the expression of IL-6Rα in PEL cell lines, bevacizumab and tocilizumab did not inhibit the proliferation of PEL cells in vitro. 25304617 2015
Entrez Id: 10320
Gene Symbol: IKZF1
IKZF1
0.020 Biomarker disease BEFREE An essential IKZF1-IRF4-MYC axis has recently been proposed to underlie the toxicity of IMiDs in PEL. 29954751 2018
Entrez Id: 3662
Gene Symbol: IRF4
IRF4
0.040 Biomarker disease BEFREE An essential IKZF1-IRF4-MYC axis has recently been proposed to underlie the toxicity of IMiDs in PEL. 29954751 2018
Entrez Id: 4609
Gene Symbol: MYC
MYC
0.080 Biomarker disease BEFREE An essential IKZF1-IRF4-MYC axis has recently been proposed to underlie the toxicity of IMiDs in PEL. 29954751 2018
Entrez Id: 11064
Gene Symbol: CNTRL
CNTRL
0.010 Biomarker disease BEFREE An methylthiotetrazole assay revealed that the cell proliferation of PEL cell lines was significantly suppressed by the addition of CEP (1-10 microg/ml). 19521981 2009
Entrez Id: 11135
Gene Symbol: CDC42EP1
CDC42EP1
0.010 Biomarker disease BEFREE An methylthiotetrazole assay revealed that the cell proliferation of PEL cell lines was significantly suppressed by the addition of CEP (1-10 microg/ml). 19521981 2009
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.100 Biomarker disease BEFREE Anti-IL6 neutralizing antibodies had no effect on PEL cell line proliferation; conversely, whereas anti-IL6R alone inhibited only weakly, anti-gp130 and anti-gp130 plus anti-IL6R showed strong inhibitory effects (>20% inhibition in 5/9 lines and >60% inhibition in 3/9 lines). 10214873 1999
Entrez Id: 3956
Gene Symbol: LGALS1
LGALS1
0.010 Biomarker disease BEFREE Bifunctionalized NPs were tested in vitro on two PEL's cell line (BCBL-1 and HBL-6). 28728978 2017
Entrez Id: 3082
Gene Symbol: HGF
HGF
0.030 Biomarker disease BEFREE By using a combination of immunological and biological assays, production and secretion of a functional HGF species was identified in all PEL cell lines analyzed. 10673746 2000