Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.060 GeneticVariation disease BEFREE Two patients with FSCCL, 22 patients with DSCCL, and all of the patients with MZL had a phenotype of mantle zone (MZ) B-lymphocytes (SIgD+, Leu-1+, Leu-8+, positive alkaline phosphatase [ALPase+], and negative common acute lymphoblastic leukemia antigen [CALLA-]), and all the tested patients (2 patients with FSCCL, 13 patients with DSCCL, and 4 patients with MZL) had germlines of bcl-2 gene. 1643614 1992
Entrez Id: 4311
Gene Symbol: MME
MME
0.040 Biomarker disease BEFREE Two patients with FSCCL, 22 patients with DSCCL, and all of the patients with MZL had a phenotype of mantle zone (MZ) B-lymphocytes (SIgD+, Leu-1+, Leu-8+, positive alkaline phosphatase [ALPase+], and negative common acute lymphoblastic leukemia antigen [CALLA-]), and all the tested patients (2 patients with FSCCL, 13 patients with DSCCL, and 4 patients with MZL) had germlines of bcl-2 gene. 1643614 1992
Entrez Id: 92749
Gene Symbol: DRC1
DRC1
0.010 Biomarker disease BEFREE As opposed to FCCL and MZL, all WDLL and all but one of the ILL (associated only with DRC-1+, OKB7+, and desmoplakin+ DRC) did not show any DRC as identifiable with the antibody panel used. 3315178 1987
Entrez Id: 49860
Gene Symbol: CRNN
CRNN
0.010 Biomarker disease BEFREE As opposed to FCCL and MZL, all WDLL and all but one of the ILL (associated only with DRC-1+, OKB7+, and desmoplakin+ DRC) did not show any DRC as identifiable with the antibody panel used. 3315178 1987
Entrez Id: 1832
Gene Symbol: DSP
DSP
0.010 Biomarker disease BEFREE As opposed to FCCL and MZL, all WDLL and all but one of the ILL (associated only with DRC-1+, OKB7+, and desmoplakin+ DRC) did not show any DRC as identifiable with the antibody panel used. 3315178 1987
Entrez Id: 100820631
Gene Symbol: MLSM7
MLSM7
0.010 GeneticVariation disease BEFREE Statistical associations with FAB subtypes were found: aCLL and trisomy 12 (P < 0.00001); mantle zone lymphoma (MZL) and t(11;14) (P < 0.00001) and del(6)(q) (P < 0.0001); CLL/mixed cell type and del(6)(q) (P < 0.002); follicular lymphoma and t(14;18) (P < 0.00001); splenic lymphoma with villous lymphocytes and del(7)(q) (P < 0.0004); leukemic lymphoma (LL) with rearrangements in chromosome 9q (P < 0.0001) and trisomy of 3 (P < 0.001). 8609731 1995
Entrez Id: 604
Gene Symbol: BCL6
BCL6
0.060 Biomarker disease BEFREE The present study for the first time demonstrates the occurrence of t(3;14)/BCL6 gene rearrangement in MZBCL, thus suggesting a role of the BCL6 proto-oncogene in the pathogenesis of MZBCL. 9332330 1997
Entrez Id: 4311
Gene Symbol: MME
MME
0.040 Biomarker disease BEFREE Karpas1106P was derived from mediastinal lymphoblastic B-cell lymphoma and exhibited the immunophenotype characteristic of marginal-zone B-cell lymphoma (MZL): smIg+, pan-B antigen+, CD5-, CD10- and CD23-. 9724100 1998
Entrez Id: 2208
Gene Symbol: FCER2
FCER2
0.010 Biomarker disease BEFREE Karpas1106P was derived from mediastinal lymphoblastic B-cell lymphoma and exhibited the immunophenotype characteristic of marginal-zone B-cell lymphoma (MZL): smIg+, pan-B antigen+, CD5-, CD10- and CD23-. 9724100 1998
Entrez Id: 3492
Gene Symbol: IGH
IGH
0.020 PosttranslationalModification disease BEFREE Deregulated PAX-5 transcription from a translocated IgH promoter in marginal zone lymphoma. 9808580 1998
Entrez Id: 5079
Gene Symbol: PAX5
PAX5
0.010 AlteredExpression disease BEFREE Expression analyses confirmed that PAX-5 transcription was upregulated due to efficient initiation at the Smicro promoter in the malignant B lymphocytes of patient MZL-1. 9808580 1998
Entrez Id: 2833
Gene Symbol: CXCR3
CXCR3
0.010 AlteredExpression disease BEFREE Strong CXCR3 expression was also seen in splenic marginal zone lymphoma (14 of 14 cases) and in the monocytoid and plasmacytic cells in extranodal marginal zone lymphoma (15 of 16 cases). 10627472 2000
Entrez Id: 84939
Gene Symbol: PWWP3A
PWWP3A
0.010 AlteredExpression disease BEFREE In B cell non-Hodgkin's lymphoma (NHL), MUM1 expression was observed in 73.2% (30/41) of diffuse large B cell lymphoma (DLBCL), 20% (1/5) of marginal zone lymphoma (MZL) and 43% (3/7) of small lymphocytic lymphoma (SLL) cases, whereas it was not seen in any cases of mantle cell lymphoma (MCL) or follicle center lymphoma (FCL). 10720141 2000
Entrez Id: 3662
Gene Symbol: IRF4
IRF4
0.010 AlteredExpression disease BEFREE In B cell non-Hodgkin's lymphoma (NHL), MUM1 expression was observed in 73.2% (30/41) of diffuse large B cell lymphoma (DLBCL), 20% (1/5) of marginal zone lymphoma (MZL) and 43% (3/7) of small lymphocytic lymphoma (SLL) cases, whereas it was not seen in any cases of mantle cell lymphoma (MCL) or follicle center lymphoma (FCL). 10720141 2000
Entrez Id: 604
Gene Symbol: BCL6
BCL6
0.060 Biomarker disease BEFREE The BCL6 proto-oncogene, located on 3q27, which is rearranged in some MZBCL and a high proportion of large cell B-cell lymphomas with extranodal localization, represents one of the candidate genes residing in these critical regions. 10797525 2000
Entrez Id: 355
Gene Symbol: FAS
FAS
0.020 GeneticVariation disease BEFREE Along the same lines, inactivating mutations of the proapoptotic FAS gene have been detected in a relatively high proportion of extranodal MZBCLs. 10797525 2000
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.020 GeneticVariation disease BEFREE Heterozygous deletions of P53 were detected in three out of the 33 cases, including two splenic and one extranodal MZBCL. 10913669 2000
Entrez Id: 8101
Gene Symbol: CLLS2
CLLS2
0.010 GeneticVariation disease BEFREE Heterozygous deletions of the RB gene (nodal MZBCL) and D13S25 (splenic MZBCL) were found in one case each. 10913669 2000
Entrez Id: 51750
Gene Symbol: RTEL1
RTEL1
0.010 GeneticVariation disease BEFREE We conclude that deletions of the analyzed tumor suppressor genes are relatively rare in MZBCL, which contrasts with the findings in some other subtypes of NHL. 10913669 2000
Entrez Id: 10892
Gene Symbol: MALT1
MALT1
0.050 GeneticVariation disease BEFREE The translocation of chromosome 11, long arm, region 2, band 1, to chromosome 18, long arm, region 2, band 1 (t(11;18)(q21;q21)) represents a recurrent chromosomal abnormality in extranodal marginal zone B-cell lymphoma (MZBCL) of mucosa-associated lymphoid tissue (MALT) type and leads to a fusion of the apoptosis inhibitor-2 (API2) gene on chromosome 11 and the MALT lymphoma-associated translocation (MLT) gene on chromosome 18. 10979968 2000
Entrez Id: 330
Gene Symbol: BIRC3
BIRC3
0.030 GeneticVariation disease BEFREE The translocation of chromosome 11, long arm, region 2, band 1, to chromosome 18, long arm, region 2, band 1 (t(11;18)(q21;q21)) represents a recurrent chromosomal abnormality in extranodal marginal zone B-cell lymphoma (MZBCL) of mucosa-associated lymphoid tissue (MALT) type and leads to a fusion of the apoptosis inhibitor-2 (API2) gene on chromosome 11 and the MALT lymphoma-associated translocation (MLT) gene on chromosome 18. 10979968 2000
Entrez Id: 604
Gene Symbol: BCL6
BCL6
0.060 GeneticVariation disease BEFREE i) Besides +3 and 7q-, 13q14 deletion, total/partial +12, BCL6 rearrangement, and deletions at 6q21, 11q22-23, and 17p13.3 are relatively frequent events in MZBCL; ii) unlike in mantle cell lymphoma, 9p21 deletion occurred infrequently in MZBCL; iii) a switch into high grade histology is usually associated with complex chromosome defects, including 6q-, 11q-, +12, and 17p. 11146573 2001
Entrez Id: 472
Gene Symbol: ATM
ATM
0.010 Biomarker disease BEFREE Fourteen cases of MZBCL diagnosed according to the REAL classification were studied by conventional chromosome analysis (CCA) and by interphase fluorescence in situ hybridization (FISH) using the following probes: 3q27/BCL6, 6q21, 7q31, 9p21/p16, 11q22/ATM, 13q14, 17p13, centromeres of #3, #7, #12.Pertinent clinical data were collected. 11146573 2001
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.060 Biomarker disease BEFREE In all cases of marginal zone lymphoma the marginal zone lymphocytes were Bcl-2 positive. 11298531 2001
Entrez Id: 105379528
Gene Symbol: LOC105379528
LOC105379528
0.030 GeneticVariation disease BEFREE The observed pattern of V(H) mutations suggested that nodal MZL, formerly deemed a malignancy of memory B cells, may arise from different subsets of marginal zone B cells-the naive B cells that express unmutated V(H) genes-from memory B cells showing somatic mutations without intraclonal variation, and from germinal center B cells defined by their capacity to undergo the somatic hypermutation process.(Blood.2001;98:781-786) 11468179 2001