Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 348
Gene Symbol: APOE
APOE
0.110 Biomarker disease HPO
Entrez Id: 3078
Gene Symbol: CFHR1
CFHR1
0.110 Biomarker disease HPO
Entrez Id: 10878
Gene Symbol: CFHR3
CFHR3
0.110 Biomarker disease HPO
Entrez Id: 83872
Gene Symbol: HMCN1
HMCN1
0.100 Biomarker disease HPO
Entrez Id: 3614
Gene Symbol: IMPDH1
IMPDH1
0.100 Biomarker disease HPO
Entrez Id: 2202
Gene Symbol: EFEMP1
EFEMP1
0.010 Biomarker disease BEFREE To investigate the nature of symptomatic visual disturbance in patients with EFEMP1 retinal dystrophy in the absence of geographic atrophy or choroidal neovascularization. 11913893 2002
Entrez Id: 3075
Gene Symbol: CFH
CFH
0.200 GeneticVariation disease BEFREE The CFH Y402H variant is strongly associated with both GA and CNV in the U.K. population. 16431947 2006
Entrez Id: 3075
Gene Symbol: CFH
CFH
0.200 GeneticVariation disease BEFREE To determine if the complement factor H gene (CFH) determines risk for development of geographic atrophy (GA). 16828512 2006
Entrez Id: 3075
Gene Symbol: CFH
CFH
0.200 Biomarker disease BEFREE Association analysis of CFH polymorphisms suggest that CFH may play a role in the development of pigmentary abnormalities and may modify the progression along the PA/GA scale. 17591865 2007
Entrez Id: 5654
Gene Symbol: HTRA1
HTRA1
0.070 GeneticVariation disease BEFREE In addition, rs11200638 was significantly associated with soft confluent drusen, which are strongly immunolabeled with HTRA1 antibody in an AMD eye with GA similar to wet AMD. 17426452 2007
Entrez Id: 3075
Gene Symbol: CFH
CFH
0.200 Biomarker disease BEFREE Our studies however show that both the HTRA1 and LOC387715/ARMS2 SNP appear to contribute equally to disease risk (both geographic atrophy and choroidal neovascularization) with no evidence of interaction with CFH. 18682806 2008
Entrez Id: 387715
Gene Symbol: ARMS2
ARMS2
0.200 GeneticVariation disease BEFREE We genotyped three SNPs, rs1061170 (exon 9, CFH), rs11200638 (HTRA1 promoter, -512 bp), and rs10490924 (6.6 kb upstream of HTRA1 in LOC387715/ARMS2) in 333 cases with advanced AMD (choroidal neovascularization [CNV] and geographic atrophy) and 171 age-matched examined controls. 18682806 2008
Entrez Id: 5654
Gene Symbol: HTRA1
HTRA1
0.070 GeneticVariation disease BEFREE The allelic association test for rs11200638 on the promoter of HTRA1 yielded p-values less than 10(-10) for geographic atrophy, less than 10(-16) for neovascularization, and less than 10(-19) for the pooled phenotypes (with an odds ration [OR] of 3.973; 95% confidence interval [CI] 2.928, 5.390). 18682806 2008
Entrez Id: 7098
Gene Symbol: TLR3
TLR3
0.030 Biomarker disease BEFREE Since double-stranded RNA (dsRNA) can activate TLR3-mediated apoptosis, our results suggest a role of viral dsRNA in the development of geographic atrophy and point to the potential toxic effects of short-interfering-RNA therapies in the eye. 18753640 2008
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.020 GeneticVariation disease BEFREE Higher levels of high-sensitivity C-reactive protein (odds ratio [OR] per standard deviation [SD] increase in natural log [ln] units, 2.34; 95% confidence interval [CI], 1.33-4.13) and interleukin-6 (OR per SD in ln, 2.06; 95% CI, 1.21-3.49) were associated with geographic atrophy but not other AMD end points. 18538409 2008
Entrez Id: 1401
Gene Symbol: CRP
CRP
0.010 AlteredExpression disease BEFREE Higher levels of high-sensitivity C-reactive protein (odds ratio [OR] per standard deviation [SD] increase in natural log [ln] units, 2.34; 95% confidence interval [CI], 1.33-4.13) and interleukin-6 (OR per SD in ln, 2.06; 95% CI, 1.21-3.49) were associated with geographic atrophy but not other AMD end points. 18538409 2008
Entrez Id: 3075
Gene Symbol: CFH
CFH
0.200 GeneticVariation disease BEFREE This study confirms that variants at CFH, C3, and ARMS2 confer significant risks for GA due to AMD. 19823576 2009
Entrez Id: 387715
Gene Symbol: ARMS2
ARMS2
0.200 Biomarker disease BEFREE This study confirms that variants at CFH, C3, and ARMS2 confer significant risks for GA due to AMD. 19823576 2009
Entrez Id: 3075
Gene Symbol: CFH
CFH
0.200 GeneticVariation disease BEFREE Growth rates of GA calculated from digitized serial fundus photographs showed no association with variants in the CFH, C2, C3, APOE, or TLR3 genes. 20381870 2010
Entrez Id: 387715
Gene Symbol: ARMS2
ARMS2
0.200 GeneticVariation disease BEFREE For the single nucleotide polymorphism rs10490924 in LOC387715/ARMS2, there was a significant association of GA growth rate, both adjusted and unadjusted for initial lesion size, with the homozygous risk genotype as compared with the homozygous nonrisk genotype (unadjusted P = 0.002; Bonferroni-corrected P = 0.014) and for allelic association (Bonferroni-corrected P value = 0.011). 20381870 2010
Entrez Id: 348
Gene Symbol: APOE
APOE
0.110 GeneticVariation disease BEFREE Growth rates of GA calculated from digitized serial fundus photographs showed no association with variants in the CFH, C2, C3, APOE, or TLR3 genes. 20381870 2010
Entrez Id: 5654
Gene Symbol: HTRA1
HTRA1
0.070 GeneticVariation disease BEFREE Analyses of other measures of GA progression (progression to central GA from extrafoveal GA and development of bilateral GA in those initially with unilateral GA) showed no statistically significant association between progression and the LOC387715/ARMS2/HTRA1 genotype. 20381870 2010
Entrez Id: 387715
Gene Symbol: ARMS2
ARMS2
0.200 GeneticVariation disease BEFREE The frequency of the T allele of ARMS2/HTRA1 rs10490924 was significantly higher in participants with CNV than in those with geographic atrophy (OR, 1.37; 95% confidence interval, 1.21-1.54; P value = 4.2 × 10(-7)). 21122828 2011
Entrez Id: 3075
Gene Symbol: CFH
CFH
0.200 Biomarker disease BEFREE CFH confers more risk to the bilaterality of geographic atrophy, whereas HTRA1/LOC387715 contributes more to the bilaterality of choroidal neovascularization. 21402993 2011
Entrez Id: 5362
Gene Symbol: PLXNA2
PLXNA2
0.100 Biomarker disease BEFREE Patients with the rapidly progressing diffuse-trickling GA phenotype exhibited a characteristic marked separation within the RPE/BM complex on SD-OCT-imaging. 21310912 2011