Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7076
Gene Symbol: TIMP1
TIMP1
0.010 AlteredExpression disease BEFREE Patients with GA had higher plasma levels of TIMP-1 (p < 0.001) and MMP-9 (p = 0.022) compared to healthy controls. 30288950 2019
Entrez Id: 4345
Gene Symbol: CD200
CD200
0.010 AlteredExpression disease BEFREE Our data reveals that abnormal monocytic CD200 expression is present in GA, and in particular among those identified as fast progressors. 30047199 2019
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.010 AlteredExpression disease BEFREE Patients with GA showed an increase in proinflammatory markers of IL-6 (P = 0.009), TNF receptor 2 (P = 0.013), and CRP (P = 0.017) compared to healthy controls. 30644965 2019
Entrez Id: 3576
Gene Symbol: CXCL8
CXCL8
0.010 AlteredExpression disease BEFREE We found that IL-8 levels were markedly higher in patients with GA when compared to patients with neovascular AMD (P = 0.013). 30644965 2019
Entrez Id: 5228
Gene Symbol: PGF
PGF
0.010 Biomarker disease BEFREE Recent research suggests that modulation of PlGF could also be important in the geographic atrophy (GA) form of late AMD by protecting the outer retina and the retinal pigment epithelium (RPE). 31055948 2019
Entrez Id: 115004
Gene Symbol: CGAS
CGAS
0.010 AlteredExpression disease BEFREE Moreover, caspase-4, gasdermin D, interferon-β, and cGAS levels were elevated in the RPE in human eyes with geographic atrophy. 29176737 2018
Entrez Id: 7143
Gene Symbol: TNR
TNR
0.010 GeneticVariation disease BEFREE Furthermore, we detected association of rs58978565 near TNR (P = 2.3 × 10-8), rs28368872 near ATF7IP2 (P = 2.9 × 10-8) and rs142450006 near MMP9 (P = 0.0006) with progression to choroidal neovascularization but not geographic atrophy. 29346644 2018
Entrez Id: 1410
Gene Symbol: CRYAB
CRYAB
0.010 Biomarker disease BEFREE This report describes the protective potential of a peptide derived from the αB crystallin protein using a sodium iodate (NaIO<sub>3</sub>) induced mouse model of GA. 29778783 2018
Entrez Id: 80063
Gene Symbol: ATF7IP2
ATF7IP2
0.010 GeneticVariation disease BEFREE Furthermore, we detected association of rs58978565 near TNR (P = 2.3 × 10-8), rs28368872 near ATF7IP2 (P = 2.9 × 10-8) and rs142450006 near MMP9 (P = 0.0006) with progression to choroidal neovascularization but not geographic atrophy. 29346644 2018
Entrez Id: 4179
Gene Symbol: CD46
CD46
0.010 AlteredExpression disease BEFREE One of the earliest changes in the retina of AMD patients is the loss of CD46 expression in the retinal pigment epithelial (RPE) cells in the course of geographic atrophy. 29093709 2017
Entrez Id: 1131
Gene Symbol: CHRM3
CHRM3
0.010 Biomarker disease BEFREE Subretinal blebs of PBS or NaIO3 caused different degrees of outer neuroretinal degeneration, RPE hyperautofluorescence, focal RPE loss, and choroidal atrophy; that is, hallmark characteristics of GA. 28241319 2017
Entrez Id: 7431
Gene Symbol: VIM
VIM
0.010 Biomarker disease BEFREE While this pattern was also observed in the GA retinas (n = 7), each also had a distinct area in which vimentin+ and vimentin+/GFAP+ processes created a subretinal membrane. 28249091 2017
Entrez Id: 706
Gene Symbol: TSPO
TSPO
0.010 Biomarker disease BEFREE Subretinal blebs of PBS or NaIO3 caused different degrees of outer neuroretinal degeneration, RPE hyperautofluorescence, focal RPE loss, and choroidal atrophy; that is, hallmark characteristics of GA. 28241319 2017
Entrez Id: 4313
Gene Symbol: MMP2
MMP2
0.010 GeneticVariation disease BEFREE To examine the <i>MMP-2 (-1306 C/T)</i> gene polymorphism and the phenotype characterized by soft and hard drusen of early age-related macular degeneration (AMD) and geographic atrophy of late AMD form. 28944191 2017
Entrez Id: 114902
Gene Symbol: C1QTNF5
C1QTNF5
0.010 GeneticVariation disease BEFREE Sequencing of C1QTNF5 revealed 28 unique variants although none showed a statistically significant association with dt-GA when compared with 1000G individuals. 27149696 2016
Entrez Id: 407027
Gene Symbol: MIR301A
MIR301A
0.010 GeneticVariation disease BEFREE To evaluate subtype-specificity, an additional 59 AMD cases with pure unilateral or bilateral geographic atrophy (GA) were analyzed for microRNAs hsa-mir-301-3p, hsa-mir-361-5p, and hsa-mir-424-5p. 25203061 2014
Entrez Id: 9734
Gene Symbol: HDAC9
HDAC9
0.010 Biomarker disease BEFREE This ligand-to-targetto DNA sequence variant-to disease approach provided guidance on rational design of preclinical studies and identified associations between: 1) valproic acid and advanced AMD-associated genes with the capacity to alter GABA-succinate signaling (ALDH5A1, CACNA1C, SUCLA2, and GABBR2) and chromatin remodeling (HDAC9); and 2) Ropinirole and a geographic atrophy-associated gene (DRD3) with the capacity to alter systems involved in cAMP-PKA signaling. 25109799 2014
Entrez Id: 6648
Gene Symbol: SOD2
SOD2
0.010 GeneticVariation disease BEFREE A recent genome-wide association study has reported three newly identified susceptible loci (rs2842992 near the gene SOD2, rs1789110 near the gene MBP and rs722782 near the gene C8orf42) to be associated with the geographic atrophy subtype of age-related macular degeneration in European-descent population. 24667176 2014
Entrez Id: 841
Gene Symbol: CASP8
CASP8
0.010 AlteredExpression disease BEFREE Coupled with our observation of increased Caspase-8 expression in the RPE of human eyes with geographic atrophy, our findings provide a rationale for targeting this apoptotic pathway in this disease. 25349431 2014
Entrez Id: 494336
Gene Symbol: MIR424
MIR424
0.010 AlteredExpression disease BEFREE While we found no significant differences between GA AMD and controls neither individually nor for a combined microRNAs profile, hsa-mir-424-5p levels remained significantly higher in GA AMD when compared to NV (pcorrected<0.005). 25203061 2014
Entrez Id: 157695
Gene Symbol: TDRP
TDRP
0.010 GeneticVariation disease BEFREE A recent genome-wide association study has reported three newly identified susceptible loci (rs2842992 near the gene SOD2, rs1789110 near the gene MBP and rs722782 near the gene C8orf42) to be associated with the geographic atrophy subtype of age-related macular degeneration in European-descent population. 24667176 2014
Entrez Id: 4155
Gene Symbol: MBP
MBP
0.010 GeneticVariation disease BEFREE A recent genome-wide association study has reported three newly identified susceptible loci (rs2842992 near the gene SOD2, rs1789110 near the gene MBP and rs722782 near the gene C8orf42) to be associated with the geographic atrophy subtype of age-related macular degeneration in European-descent population. 24667176 2014
Entrez Id: 4043
Gene Symbol: LRPAP1
LRPAP1
0.010 GeneticVariation disease BEFREE The prevalence of reticular pseudodrusen was 83% in RAP, 50% in geographic atrophy, 9% in typical AMD, and 2% in PCV. 23111182 2013
Entrez Id: 966
Gene Symbol: CD59
CD59
0.010 Biomarker disease BEFREE In maculae of AMD specimens, we found that the complement regulatory protein, CD59, was increased in regions of uninvolved retinal pigmented epithelium (RPE) of early AMD, but decreased in the RPE overlying drusen and in geographic atrophy, an advanced form of AMD. 23097248 2013
Entrez Id: 1524
Gene Symbol: CX3CR1
CX3CR1
0.010 GeneticVariation disease BEFREE In this Greek population, after adjusting for known risk factors, increased risk of geographic atrophy (GA) AMD among the carriers of the V249I polymorphism in the CX3CR1 gene was found. 22816662 2012