Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 Biomarker disease BEFREE SATB2-associated syndrome is one example of a syndromic cleft palate that is accompanied by intellectual disability, and various dental anomalies. 30848049 2019
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 Biomarker disease BEFREE In the meta-analysis, we also did not find that the SATB2 was associated with nonsyndromic cleft palate risk, in Asians or in Caucasians. 30511632 2018
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 Biomarker disease GENOMICS_ENGLAND Clinical and molecular consequences of disease-associated de novo mutations in SATB2. 28151491 2017
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 GeneticVariation disease BEFREE SATB2 variants should be considered in cases with psychomotor retardation alone or in any cases with Rett-like phenotypes, regardless of the typical features of SAS such as cleft palate. 26596517 2016
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 Biomarker disease BEFREE Haploinsufficiency of SATB2 causes cleft palate, intellectual disability with deficient speech, facial and dental abnormalities, and other variable features known collectively as SATB2-associated syndrome. 27409069 2016
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 GeneticVariation disease BEFREE In humans, chromosomal translocations and deletions of 2q33.1 leading to SATB2 haploinsufficiency are associated with cleft palate (CP), facial dysmorphism and intellectual disability (ID). 24301056 2014
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 GeneticVariation disease BEFREE One patient in this cohort has a deletion entirely within SATB2 and has a cleft palate, whereas several patients with larger deletions have a high arched palate. 21343628 2011
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 AlteredExpression disease BEFREE Here, we show that AEC p63 mutations affect the ability of the p63 protein to interact with special AT-rich binding protein-2 (SATB2), which has recently also been implicated in the development of cleft palate. p63 and SATB2 are co-expressed early in development in the ectoderm of the first and second branchial arches, two essential sites where signaling is required for craniofacial patterning. 21965674 2011
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 GeneticVariation disease BEFREE Whilst there is some variation in the phenotypes of patients with 2q3 deletions all share a commonly deleted region within 2q33.1 which includes SATB2, a gene previously shown to be associated with cleft palate. 19576302 2010
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 Biomarker disease CTD_human Toriello-Carey syndrome in a patient with a de novo balanced translocation [46,XY,t(2;14)(q33;q22)] interrupting SATB2. 19170718 2009
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 GeneticVariation disease BEFREE Heterozygous nonsense mutation SATB2 associated with cleft palate, osteoporosis, and cognitive defects. 17377962 2007
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 Biomarker disease CTD_human We find that, similar to the way in which SATB2 is perceived to act in humans, craniofacial defects due to haploinsufficiency of Satb2, including cleft palate (in approximately 25% of cases), phenocopy those seen with 2q32-q33 deletions and translocations in humans. 16960803 2006
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 Biomarker disease MGD We find that, similar to the way in which SATB2 is perceived to act in humans, craniofacial defects due to haploinsufficiency of Satb2, including cleft palate (in approximately 25% of cases), phenocopy those seen with 2q32-q33 deletions and translocations in humans. 16960803 2006
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 GeneticVariation disease BEFREE Here we show by high-resolution FISH mapping of two de novo CPO-associated translocations involving 2q32-q33 that one breakpoint interrupts the transcription unit of the gene encoding the DNA-binding protein SATB2 (formerly KIAA1034). 12915443 2003
Entrez Id: 23314
Gene Symbol: SATB2
SATB2
0.900 CausalMutation disease CLINVAR
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.450 AlteredExpression disease BEFREE This process is driven by TGFβ3-mediated, down-regulation of p63 in the medial edge epithelia which allows periderm migration out of the midline epithelial seam and reduces the proliferative potential of the midline epithelial seam thereby preventing cleft palate. 28803895 2019
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.450 AlteredExpression disease BEFREE Subsequently, TGFβ3-induced down-regulation of p63 in the medial edge epithelia of the palatal shelves is a pre-requisite for palatal fusion by facilitating periderm migration from, and reducing the proliferative potential of, the midline epithelial seam thereby preventing cleft palate. 28604778 2017
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.450 GeneticVariation disease BEFREE Here, we report on a SAM domain mutation (p.Asp564His) in TP63 that predisposed the patients to have nonsyndromic cleft palate and nonsyndromic cleft lip and palate. 21567929 2011
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.450 Biomarker disease BEFREE Here, we show that AEC p63 mutations affect the ability of the p63 protein to interact with special AT-rich binding protein-2 (SATB2), which has recently also been implicated in the development of cleft palate. p63 and SATB2 are co-expressed early in development in the ectoderm of the first and second branchial arches, two essential sites where signaling is required for craniofacial patterning. 21965674 2011
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.450 GeneticVariation disease BEFREE Cleft palate and ADULT phenotype in a patient with a novel TP63 mutation suggests lumping of EEC/LM/ADULT syndromes into a unique entity: ELA syndrome. 21990121 2011
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.450 CausalMutation disease CLINVAR Molecular basis of EEC (ectrodactyly, ectodermal dysplasia, clefting) syndrome: five new mutations in the DNA-binding domain of the TP63 gene and genotype-phenotype correlation. 19903181 2010
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.450 Biomarker disease CTD_human We performed p63 mutation analysis in a sample of 43 individuals and families affected with EEC syndrome, in 35 individuals affected with SHFM, and in three families with the EEC-like condition limb-mammary syndrome (LMS), which is characterized by ectrodactyly, cleft palate, and mammary-gland abnormalities. 11462173 2001
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
0.440 Biomarker disease BEFREE Among these, it is hypothesized that haploinsufficiency of AMIGO2 is potentially responsible for the mental retardation of this patient, and of COL2A1 for the cleft palate and high myopia. 20933621 2011
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
0.440 GeneticVariation disease BEFREE Overall, 20 of 23 sporadic patients with a COL2A1 mutation had either a cleft palate or retinal detachment with vitreous anomalies. 20179744 2010
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
0.440 GeneticVariation disease BEFREE Regarding unique symptoms in each case, congenital fibrosis of the extraocular muscles found only in Case 1 may be caused by KIF21A deletion and hearing loss and cleft palate in Case 2 by COL2A1 defect. 15362574 2004