Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.660 GeneticVariation disease BEFREE Tumor protein p63 (TP63)-related disorders can be divided into at least six categories, including ectrodactyly-ectodermal dysplasia-cleft lip/palate syndrome 3 (EEC syndrome 3), ankyloblepharon-ectodermal defects-cleft lip/palate syndrome (AEC syndrome), acro-dermo-ungual-lacrimal-tooth syndrome (ADULT syndrome), limb-mammary syndrome (LMS), Rapp-Hodgkin syndrome (RHS) and split-hand/foot malformation 4 (SHFM4), and are all a result of heterozygous mutations of TP63. 31420900 2019
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.660 GeneticVariation disease BEFREE The third hallmark of the EEC syndrome is orofacial clefting, in particular lip and palate. p63 mutations also cause the other five inherited syndromes: symptoms are overlapping, but each of these diseases has its own characteristic phenotypic features: for instance AEC syndrome (ankyloblepharon-ectodermal defects-cleft lip/palate) has as distinctive feature ankyloblepharon, while mammary glands and nipples hypoplasia are frequent findings in LMS syndrome and in ADULT syndrome (acro-dermato-ungual-lacrimal-tooth syndrome). 23407076 2013
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.660 Biomarker disease BEFREE To test whether TP63 is the disease-causative gene for these phenotypes in Chinese, we recruited two Chinese Ectrodactyly-Ectodermal-dysplasia-Cleft lip/palate syndrome (EEC) cases and a Limb-Mammary-Syndrome (LMS) patient to carry out TP63 gene sequencing. 20410354 2010
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.660 GeneticVariation disease BEFREE Moreover, we show that transcription of Dlx3 is abrogated by mutations in the sterile alpha-motif (SAM) domain of p63 that are associated with ankyloblepharon-ectodermal dysplasia-clefting (AEC) dysplasias, but not by mutations found in ectrodactylyectodermal dysplasia-cleft lip/palate (EEC), Limb-mammary syndrome (LMS) and split hand-foot malformation (SHFM) dysplasias. 17164413 2007
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.660 GeneticVariation disease BEFREE We report on two unrelated families with EEC syndrome (ectrodactyly, ectodermal dysplasia, cleft lip/palate), each with an Arg227Gln TP63 gene mutation, where the phenotype overlapped extensively with the allelic disorder, limb-mammary syndrome (LMS). 17431922 2007
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.660 GermlineCausalMutation disease ORPHANET We performed p63 mutation analysis in a sample of 43 individuals and families affected with EEC syndrome, in 35 individuals affected with SHFM, and in three families with the EEC-like condition limb-mammary syndrome (LMS), which is characterized by ectrodactyly, cleft palate, and mammary-gland abnormalities. 11462173 2001
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.660 Biomarker disease GENOMICS_ENGLAND We performed p63 mutation analysis in a sample of 43 individuals and families affected with EEC syndrome, in 35 individuals affected with SHFM, and in three families with the EEC-like condition limb-mammary syndrome (LMS), which is characterized by ectrodactyly, cleft palate, and mammary-gland abnormalities. 11462173 2001
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.660 Biomarker disease CTD_human We performed p63 mutation analysis in a sample of 43 individuals and families affected with EEC syndrome, in 35 individuals affected with SHFM, and in three families with the EEC-like condition limb-mammary syndrome (LMS), which is characterized by ectrodactyly, cleft palate, and mammary-gland abnormalities. 11462173 2001
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.660 GeneticVariation disease BEFREE We performed p63 mutation analysis in a sample of 43 individuals and families affected with EEC syndrome, in 35 individuals affected with SHFM, and in three families with the EEC-like condition limb-mammary syndrome (LMS), which is characterized by ectrodactyly, cleft palate, and mammary-gland abnormalities. 11462173 2001
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.660 Biomarker disease GENOMICS_ENGLAND
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.060 Biomarker disease BEFREE Furthermore, double-labelled immunofluorescence revealed co-localization of 53BP1 with p53 and Ki-67 in the LMS component, which indicated abnormal DNA damage response in proliferative state. 31570279 2019
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.060 Biomarker disease BEFREE Sequencing performed so far, based on exome, mostly confirmed that p53 and RB1 are the two main pathways altered in LMS oncogenesis. 31033567 2019
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.060 Biomarker disease BEFREE Using tissue microarrays and cases from Tulane Medical Center and Medical College of Wisconsin, expression of smoothelin, DOG1, caldesmon, and p16 was evaluated by immunohistochemistry in 87 cases of LMS. 29189258 2017
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.060 Biomarker disease BEFREE Compared with leiomyoma (LM), the figures for the strength of association were as follows: LM variants (RR = 1.53, 95%CI = 1.03-2.27, P = 0.036, random effect); leiomyosarcoma (LMS) (RR = 3.20, 95%CI = 1.68-6.12, P < 0.001, random effect); and smooth muscle tumors of uncertain malignant potential (STUMP) (RR = 2.90, 95%CI = 1.17-7.21, P = 0.022, random effect). p16INK4a expression was significantly higher in LMS than in LM variants (RR = 3.74, 95%CI = 1.96-7.13, P < 0.001, random effect) or STUMP (RR = 1.67, 95%CI = 1.26-2.23, P < 0.001, fixed effect). 28340268 2017
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.060 AlteredExpression disease BEFREE Genes overexpressed in LMS included CDKN2A, FABP3, TAGLN, JPH2, GEM, NAV2 and RAB23. 23178314 2013
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.060 GeneticVariation disease BEFREE Although p14 inactivation or overexpression of the human murine double minute homolog (HDM2) were frequent in LMS and UPS and could substitute for TP53 mutation or deletion, such alterations were rare in angiosarcomas. 22648906 2012
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.060 AlteredExpression disease BEFREE Although p14 inactivation or overexpression of the human murine double minute homolog (HDM2) were frequent in LMS and UPS and could substitute for TP53 mutation or deletion, such alterations were rare in angiosarcomas. 22648906 2012
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.060 GeneticVariation disease BEFREE In conclusion, although DAP kinase alteration was relatively rare, DAP kinase alteration and/or p53 mutation may associate with tumor progression in soft-tissue LMSs. 15492995 2004
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.060 AlteredExpression disease BEFREE Decreased expression of the p16 protein was identified in 25 of 77 LMSs (32%). 14595762 2003
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.060 AlteredExpression disease BEFREE A number of genes were found to be differentially expressed in these sample sets, and six genes including cyclin-dependent kinase inhibitor 2A, diaphanous (Drosophila homolog) 3, doublecortin, calpain 6, interleukin-17B, and proteolipid 1 were found to be overexpressed in LMS compared with normal myometrium and 18 other tissues. 12942572 2003
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.060 Biomarker disease BEFREE Analysis of the p63 gene, a homolog of p53 located in the critical LMS/EEC interval, revealed heterozygous mutations in nine unrelated EEC families. 10535733 1999
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.060 Biomarker disease BEFREE Moreover, p53 positivity was considered to be a good marker for predicting the prognosis of LMS. 8601525 1995
Entrez Id: 2099
Gene Symbol: ESR1
ESR1
0.040 Biomarker disease BEFREE It highlights the difficulty in classifying some gastrointestinal SMNs as either LMs or LMSs and the importance of ER status in SMNs. 30431607 2018
Entrez Id: 2099
Gene Symbol: ESR1
ESR1
0.040 Biomarker disease BEFREE We selected 17 biomarkers highly relevant to LMS in 4 tumorigenic pathways including steroid hormone receptors (estrogen receptor [ER] and progesterone receptor [PR]), cell cycle/tumor suppressor genes, AKT pathway markers, and associated oncogenes. 29258902 2018
Entrez Id: 5698
Gene Symbol: PSMB9
PSMB9
0.040 GeneticVariation disease BEFREE Here, we reviewed human uterine LMS for genetic mutations in the IFNγ signal cascade, and found serious mutations in three genes, Janus activated kinase 1 (JAK1), signal transducer and activator of transcription 1 (STAT1) and PSMB9/β1i promoter regions. 27798858 2016