Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 84295
Gene Symbol: PHF6
PHF6
0.700 GeneticVariation disease BEFREE Analysis of the mutational genotype of adult T-ALL revealed a positive correlation between PTPN2 deletions and gain-of-function alterations in the IL7R/JAK-STAT signaling pathway as well as PHF6 and WT1 mutations. 31270080 2019
Entrez Id: 84295
Gene Symbol: PHF6
PHF6
0.700 Biomarker disease BEFREE The depletion of PHF6 decreases the drug sensitivity of T-cell acute lymphoblastic leukemia to prednisolone. 30551478 2019
Entrez Id: 84295
Gene Symbol: PHF6
PHF6
0.700 GeneticVariation disease BEFREE This proposed diagnostic group is supported by (i) retained myeloid differentiation potential during early T cell lymphoid development, (ii) recognition that some cases of acute myeloid leukaemia (AML) harbour hallmarks of T cell development, such as T-cell receptor gene rearrangements and (iii) common gene mutations in subsets of AML and T cell acute lymphoblastic leukaemia (T-ALL), including WT1, PHF6, RUNX1 and BCL11B. 29441563 2018
Entrez Id: 84295
Gene Symbol: PHF6
PHF6
0.700 AlteredExpression disease BEFREE We selected miR-128-3p as a candidate PHF6-targeting, oncogenic microRNA and demonstrated regulation of PHF6 expression upon modulation of this microRNA in T-cell acute lymphoblastic leukemia cell lines. 24895337 2014
Entrez Id: 84295
Gene Symbol: PHF6
PHF6
0.700 GeneticVariation disease BEFREE Mutations in the PHF6 gene have also been associated with T-cell acute lymphoblastic leukemia and acute myeloid leukemia. 24554700 2014
Entrez Id: 84295
Gene Symbol: PHF6
PHF6
0.700 GeneticVariation disease BEFREE Our data suggest that PHF6 mutation might play a role in tumorigenesis not only of T-ALL, but also of AML and HCC. 21736506 2012
Entrez Id: 84295
Gene Symbol: PHF6
PHF6
0.700 GeneticVariation disease BEFREE Loss of function mutations and deletions encompassing the plant homeodomain finger 6 (PHF6) gene are present in about 20% of T-cell acute lymphoblastic leukemias (ALLs). 21030981 2011
Entrez Id: 84295
Gene Symbol: PHF6
PHF6
0.700 GeneticVariation disease BEFREE Although PHF6 is X-linked and mutations have been reported to occur almost exclusively in male patients, we found no sex difference in the incidences of PHF6 mutations in Chinese patients with T-cell acute lymphoblastic leukemia. 21880637 2011
Entrez Id: 84295
Gene Symbol: PHF6
PHF6
0.700 Biomarker disease GENOMICS_ENGLAND Overall, these results identify PHF6 as a new X-linked tumor suppressor in T-ALL and point to a strong genetic interaction between PHF6 loss and aberrant expression of TLX transcription factors in the pathogenesis of this disease. 20228800 2010
Entrez Id: 84295
Gene Symbol: PHF6
PHF6
0.700 Biomarker disease CTD_human Overall, these results identify PHF6 as a new X-linked tumor suppressor in T-ALL and point to a strong genetic interaction between PHF6 loss and aberrant expression of TLX transcription factors in the pathogenesis of this disease. 20228800 2010
Entrez Id: 84295
Gene Symbol: PHF6
PHF6
0.700 GeneticVariation disease BEFREE Our observation indicates that BFLS may represent a cancer predisposition syndrome and that mutations of PHF6 contribute to T-ALL. 20806366 2010
Entrez Id: 84295
Gene Symbol: PHF6
PHF6
0.700 Biomarker disease BEFREE Overall, these results identify PHF6 as a new X-linked tumor suppressor in T-ALL and point to a strong genetic interaction between PHF6 loss and aberrant expression of TLX transcription factors in the pathogenesis of this disease. 20228800 2010
Entrez Id: 84295
Gene Symbol: PHF6
PHF6
0.700 CausalMutation disease CGI
Entrez Id: 4849
Gene Symbol: CNOT3
CNOT3
0.640 GeneticVariation disease BEFREE For example, mutation in CNOT3, a gene coding for CNOT3 subunit of the CCR4-NOT complex, is found to be associated with T-cell acute lymphoblastic leukemia, T-ALL, though its contribution to other cancers has not been reported. 30531840 2019
Entrez Id: 4849
Gene Symbol: CNOT3
CNOT3
0.640 GeneticVariation disease BEFREE We recently identified CNOT3 loss-of-function mutations in patients with T-cell acute lymphoblastic leukemia (T-ALL). 30144809 2018
Entrez Id: 4849
Gene Symbol: CNOT3
CNOT3
0.640 GeneticVariation disease BEFREE Of interest, besides CNOT6 down-regulation, these cases also showed low BTG1 expression and a high incidence of CNOT3 mutations, suggesting that the CCR4-NOT complex plays a crucial role in the pathogenesis of HOXA-positive T-cell acute lymphoblastic leukemia with terminal 5q deletions. 27151989 2016
Entrez Id: 4849
Gene Symbol: CNOT3
CNOT3
0.640 Biomarker disease CTD_human We identify CNOT3 as a tumor suppressor mutated in 7 of 89 (7.9%) adult T-ALLs, and its knockdown causes tumors in a sensitized Drosophila melanogaster model. 23263491 2013
Entrez Id: 4849
Gene Symbol: CNOT3
CNOT3
0.640 GeneticVariation disease BEFREE We identify CNOT3 as a tumor suppressor mutated in 7 of 89 (7.9%) adult T-ALLs, and its knockdown causes tumors in a sensitized Drosophila melanogaster model. 23263491 2013
Entrez Id: 4849
Gene Symbol: CNOT3
CNOT3
0.640 SomaticCausalMutation disease ORPHANET We identify CNOT3 as a tumor suppressor mutated in 7 of 89 (7.9%) adult T-ALLs, and its knockdown causes tumors in a sensitized Drosophila melanogaster model. 23263491 2013
Entrez Id: 4849
Gene Symbol: CNOT3
CNOT3
0.640 CausalMutation disease CGI
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.600 GeneticVariation disease BEFREE While activating mutations of NOTCH1 are observed in most T-ALL cases, these mutations alone are not sufficient to drive the full development of T-ALL. 31822496 2020
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.600 Biomarker disease BEFREE Moreover, it is known that NOTCH1 antagonizes IKZF1 in T-ALL. 30578688 2019
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.600 Biomarker disease BEFREE To directly explore whether IL-7R targeting may be therapeutically efficient against T-ALL relapse, we focused on a known Notch1-induced T-ALL model, because a majority of T-ALL patients harbor activating mutations in NOTCH1, which is a transcriptional regulator of IL-7R expression. 31530562 2019
Entrez Id: 6886
Gene Symbol: TAL1
TAL1
0.600 Biomarker disease BEFREE Our data provide insight into the mechanisms controlling lymphocyte specification and may reveal a basis for the unique functions of Tal1 and Lyl1 in T acute lymphoblastic leukemia. 30962294 2019
Entrez Id: 3195
Gene Symbol: TLX1
TLX1
0.600 Biomarker disease BEFREE TLX1- or TLX3-deregulated T-cell acute lymphoblastic leukemias (T-ALL; TLX1/3<sup>+</sup>) share an immature cortical phenotype and similar transcriptional signatures. 30659025 2019