Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 2737
Gene Symbol: GLI3
GLI3
0.510 Biomarker group BEFREE Mutational analysis of SHH and GLI3 in anorectal malformations. 18655123 2008
Entrez Id: 1044
Gene Symbol: CDX1
CDX1
0.320 AlteredExpression group BEFREE Down regulation of CDX-1 gene has also been implicated in isolated ARM patients. 29094201 2018
Entrez Id: 1044
Gene Symbol: CDX1
CDX1
0.320 AlteredExpression group BEFREE Furthermore, it was suggested that the downregulation of CDX1 might be related to the development of ARMs. 23329892 2013
Entrez Id: 1910
Gene Symbol: EDNRB
EDNRB
0.310 GeneticVariation group BEFREE All investigated patients with ARM showed mobility shift aberrations and polymorphisms in the EDNRB gene. 17618893 2007
Entrez Id: 3110
Gene Symbol: MNX1
MNX1
0.310 GeneticVariation group BEFREE FISH analysis demonstrated haploinsufficiency of HLXB9, a gene identified in the triad of a presacral mass (teratoma or anterior meningocele), sacral agenesis, and anorectal malformation, which constitutes the Currarino syndrome. 14663834 2003
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.240 AlteredExpression group BEFREE These results also suggest that reductions in BMP4 expression were possibly responsible for dysfunction of the lumbosacral spinal cord during late developmental stages in ARMs fetal rats. 29959980 2018
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.240 Biomarker group BEFREE Major genetic aberrations proposed in the pathogenesis of ARM affect members of the Wnt, Hox (homebox) genes, Sonic hedgehog (Shh) and Gli2, Bmp4, Fgf and CDX1 signalling pathways; probable targets of future molecular gene therapy. 29094201 2018
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.240 AlteredExpression group BEFREE Expression of SHH, GLI family zinc finger 2 (GLI2) and BMP4 mRNA in the posterior wall of the terminal rectum in 40 patients with ARMs (15 high-type and 25 low-type) and 10 normal controls was assessed by reverse transcription-polymerase chain reaction. 20146882 2010
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.240 Biomarker group BEFREE We examined the associations of ARM with SNPs in GLI2 and BMP4 using DNA samples of the children and associations with previous miscarriages using parental questionnaires. 28057877 2017
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.210 Biomarker group BEFREE Mutational analysis of SHH and GLI3 in anorectal malformations. 18655123 2008
Entrez Id: 2263
Gene Symbol: FGFR2
FGFR2
0.210 Biomarker group BEFREE Moreover, significant decreased mRNA expressions of these androgen-related genes such as sonic hedgehog, Gli2, Gli3, bone morphogenetic protein 4, Wnt5a, Hoxa13, Hoxd13, fibroblast growth factor 10, and fibroblast growth factor receptor 2 were found in terminal rectum of the ARM male pubs. 25213187 2016
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.030 Biomarker group BEFREE Major genetic aberrations proposed in the pathogenesis of ARM affect members of the Wnt, Hox (homebox) genes, Sonic hedgehog (Shh) and Gli2, Bmp4, Fgf and CDX1 signalling pathways; probable targets of future molecular gene therapy. 29094201 2018
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.030 AlteredExpression group BEFREE Patients with low-type ARMs differed from controls only in the expression of GLI2 mRNA. 20146882 2010
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.030 Biomarker group BEFREE We examined the associations of ARM with SNPs in GLI2 and BMP4 using DNA samples of the children and associations with previous miscarriages using parental questionnaires. 28057877 2017
Entrez Id: 11197
Gene Symbol: WIF1
WIF1
0.020 Biomarker group BEFREE Dysregulation of this endodermal Shh-Wif1-β-catenin signaling axis contributes to ARM pathogenesis. 24632949 2014
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.020 AlteredExpression group BEFREE And the expression of Bcl-2 decreased, whereas the level of Bax increased in the ARMs fetuses. 28712050 2017
Entrez Id: 5914
Gene Symbol: RARA
RARA
0.020 Biomarker group BEFREE Expression studies in mice suggest that NEUROD2 and RARA, which reside within the newly identified del17q12q21.2 region, are candidate genes for the formation of microcephaly and ARM. 25250690 2015
Entrez Id: 11197
Gene Symbol: WIF1
WIF1
0.020 AlteredExpression group BEFREE Western blot and real time RT-PCR revealed that Wif1 and β-catenin protein and mRNA expression level was significantly decreased in the ARM groups compared with the normal group on GD14 and GD15 (<i>p</i> < 0.05). 29507836 2018
Entrez Id: 55650
Gene Symbol: PIGV
PIGV
0.020 GeneticVariation group BEFREE Our findings in the largest reported cohort to date significantly extend the range of reported manifestations associated with PIGV mutations and demonstrate that the severe end of the clinical spectrum presents as a multiple congenital malformation syndrome with a high frequency of Hirschsprung disease, vesicoureteral, and renal anomalies as well as anorectal malformations. 24129430 2014
Entrez Id: 1499
Gene Symbol: CTNNB1
CTNNB1
0.020 AlteredExpression group BEFREE Western blot and real time RT-PCR revealed that Wif1 and β-catenin protein and mRNA expression level was significantly decreased in the ARM groups compared with the normal group on GD14 and GD15 (<i>p</i> < 0.05). 29507836 2018
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.020 AlteredExpression group BEFREE These results indicate that upregulation of MSX2 and downregulation of BCL2 during cloacal development into the rectum and urethra might be related to the ARM development, and MSX2 promoted apoptosis through reduction of BCL2 expression during the development of anorectal development in ARM. 30268882 2018
Entrez Id: 5914
Gene Symbol: RARA
RARA
0.020 AlteredExpression group BEFREE The serum concentration of VA in ARM neonates was lower than that in control neonates (P < 0.0001), and RARα mRNA expression was lower in the rectum specimens from ARM patients than in the colon specimens from a stoma and the rectum specimens from controls (P < 0.05); there was no significant difference between the colon from a stoma and the rectum from controls. 31190129 2019
Entrez Id: 1499
Gene Symbol: CTNNB1
CTNNB1
0.020 GeneticVariation group BEFREE These results indicate that some ARM phenotypes in the β-catenin GOF mutants were caused by abnormal Bmp signaling. 24632946 2014
Entrez Id: 89780
Gene Symbol: WNT3A
WNT3A
0.020 Biomarker group BEFREE These data revealed that the expression of Wnt3a in ARM embryos was notably reduced, indicating a potential role for Wnt3a in the maldevelopment of the SMC in patients with ARMs. 28260053 2017
Entrez Id: 55650
Gene Symbol: PIGV
PIGV
0.020 GeneticVariation group BEFREE We reviewed the eight reported cases with proven PIGV mutations and re-defined the phenotypic spectrum associated with PIGV mutations: intellectual disability, the distinct facial gestalt, brachytelephalangy, and hyperphosphatasia are constant features but also anorectal malformations and Hirschsprung disease as well as cleft lip/palate and hearing impairment should be considered as part of the clinical spectrum. 21739589 2011