Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 894
Gene Symbol: CCND2
CCND2
0.010 GeneticVariation disease BEFREE Two glioblastomas and one anaplastic astrocytoma showed CCND2 gene amplification, but lacked significant overexpression of CCND2 transcripts. 10416984 1999
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation disease BEFREE Primary (de novo) glioblastomas develop in older patients and are characterized by epidermal growth factor (EGF) receptor amplification/overexpression, p16 deletion, and PTEN mutations, whereas secondary glioblastomas that progressed from low-grade or anaplastic astrocytoma develop in younger patients and frequently contain p53 mutations. 10666371 2000
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation disease BEFREE The frequency of p53 mutations was 28.8% (19 of 66) and was higher in anaplastic astrocytoma (9 of 14, 64.3%,) than in glioblastoma multiforme (GBM; 7 of 27, 25.9%,), supporting previous speculation that there are at least two genetic pathways leading to GBM, a de novo pathway without p53 mutation and a "progressive" pathway with p53 mutation. 11051241 2000
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.020 Biomarker disease BEFREE Immunoreactivity for p16 was absent in 56% of the GBM and 77.5% of the AA. 11029499 2000
Entrez Id: 115482713
Gene Symbol: H3P10
H3P10
0.010 Biomarker disease BEFREE Immunoreactivity for p16 was absent in 56% of the GBM and 77.5% of the AA. 11029499 2000
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 Biomarker disease BEFREE Univariate survival analyses of patients with anaplastic astrocytoma identified PTEN (P =.002) and p53 (P =.012) mutations as statistically significantly associated with reduced and prolonged survival, respectively. 11504770 2001
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.070 GeneticVariation disease BEFREE PTEN mutation and EGFR amplification are important prognostic factors in patients with anaplastic astrocytoma and in older patients with glioblastoma multiforme, respectively. 11504770 2001
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.030 Biomarker disease BEFREE Univariate survival analyses of patients with anaplastic astrocytoma identified PTEN (P =.002) and p53 (P =.012) mutations as statistically significantly associated with reduced and prolonged survival, respectively. 11504770 2001
Entrez Id: 1755
Gene Symbol: DMBT1
DMBT1
0.010 Biomarker disease BEFREE The Cox proportional hazards model, adjusted for patient age at surgery, the preoperative Karnofsky Performance Scale score, and the extent of surgical resection revealed that LOH on marker D10S209 near the FGFR2 and DMBT1 genes was significantly associated with shorter survival in patients with AA. 11596960 2001
Entrez Id: 5925
Gene Symbol: RB1
RB1
0.010 PosttranslationalModification disease BEFREE In patients with multiple biopsies, methylation of the RB1 promoter was not detectable in the less malignant precursor lesions, ie, low-grade diffuse and anaplastic astrocytoma. 11204276 2001
Entrez Id: 2263
Gene Symbol: FGFR2
FGFR2
0.010 Biomarker disease BEFREE The Cox proportional hazards model, adjusted for patient age at surgery, the preoperative Karnofsky Performance Scale score, and the extent of surgical resection revealed that LOH on marker D10S209 near the FGFR2 and DMBT1 genes was significantly associated with shorter survival in patients with AA. 11596960 2001
Entrez Id: 115650
Gene Symbol: TNFRSF13C
TNFRSF13C
0.010 AlteredExpression disease BEFREE In addition low levels of BR-3 gene expression was observed in six out of seven anaplastic astrocytoma tissue samples analyzed. 12168825 2002
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation disease BEFREE We had previously reported that loss of heterozygosity (LOH) of the D17S379 locus on 17p13.3 was significantly more frequent in high-grade gliomas (anaplastic astrocytoma, AA; glioblastoma multiforme, GBM) than in those of a low-grade diffuse astrocytoma (DA); however, this was independent of alterations at the TP53 locus, We also showed that LOH of D17S379 was associated with positive staining for p53 protein on immunohistochemistry, but LOH of the TP53 gene had no such association. 12850379 2003
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.070 Biomarker disease BEFREE The association of alterations in p53, MDM2, p16 or EGFR with the survival of patients with anaplastic astrocytoma or glioblastoma remains controversial. 12700122 2003
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.020 Biomarker disease BEFREE However, the tumors formed by the cells expressing exogenous VEGF (121) or VEGF (165) retained the phenotype of AA, lacking areas of necrosis that are the hallmark of the GBM phenotype. 12702589 2003
Entrez Id: 8848
Gene Symbol: TSC22D1
TSC22D1
0.010 AlteredExpression disease BEFREE Complete lack of expression of TSC-22 occurred in one sample of anaplastic astrocytoma, as well as in meningioma, brain sarcoma, sarcomatous meningioma, and oligodendroglioma. 12501169 2003
Entrez Id: 92745
Gene Symbol: SLC38A5
SLC38A5
0.010 Biomarker disease BEFREE We analysed by RT-PCR the expression of mRNAs coding for the human variants of Gln transporters: ASCT2 (system ASC), SNAT1 [ATA1] (system A), SNAT3 [SN1] and SNAT5 [SN2] (system N), in samples of human malignant gliomas WHO grades III/IV (anaplastic astrocytoma and glioblastoma), glioma-derived cell cultures, brain metastases from peripheral organs, and control brain tissue. 15094455 2004
Entrez Id: 3456
Gene Symbol: IFNB1
IFNB1
0.010 GeneticVariation disease BEFREE We performed a pilot clinical trial of safety and effectiveness of this interferon beta gene therapy in five patients with malignant glioma (glioblastoma multiforme or anaplastic astrocytoma). 14965379 2004
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 Biomarker disease BEFREE The apoptotic index (AI) was greater in GBM than in AA or DA, and more in tumours with p53 immunopositivity than in those without. 15981097 2005
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.070 Biomarker disease BEFREE Although there was little difference in age of patient by EGFR amplification or expression among glioblastoma multiforme cases, EGFR gene amplification was associated with much older age of onset of anaplastic astrocytoma; for example, EGFR-amplified anaplastic astrocytoma cases were on average 63 years old compared with 48 years for nonamplified cases (P = 0.005). 16030116 2005
Entrez Id: 57534
Gene Symbol: MIB1
MIB1
0.030 GeneticVariation disease BEFREE We prepared polyclonal anti-survivin serum to establish a survivin index for stained sections, using an immunohistochemical procedure, according to the method used for scoring MIB-1 index, and then stained 29 paraffin-embedded sections from surgical specimens of 29 patients who were classified into three grades of World Health Organization with the mean age of low grade astocytoma (grade II) being 34.7; anaplastic astrocytoma (grade III), 48.8; and glioblastoma multiform (grade IV), 58.4. 15937645 2005
Entrez Id: 4288
Gene Symbol: MKI67
MKI67
0.030 GeneticVariation disease BEFREE We prepared polyclonal anti-survivin serum to establish a survivin index for stained sections, using an immunohistochemical procedure, according to the method used for scoring MIB-1 index, and then stained 29 paraffin-embedded sections from surgical specimens of 29 patients who were classified into three grades of World Health Organization with the mean age of low grade astocytoma (grade II) being 34.7; anaplastic astrocytoma (grade III), 48.8; and glioblastoma multiform (grade IV), 58.4. 15937645 2005
Entrez Id: 1509
Gene Symbol: CTSD
CTSD
0.010 AlteredExpression disease BEFREE The results of real-time quantitative reverse transcription-PCR analysis showed that cathepsin D transcript levels became significantly higher as the glioma grade advanced (P = 0.0466, glioblastoma and anaplastic astrocytoma; P = 0.0008, glioblastoma and astrocytoma; P = 0.0271, glioblastoma and normal brain tissue; unpaired t test). 15958563 2005
Entrez Id: 429
Gene Symbol: ASCL1
ASCL1
0.010 AlteredExpression disease BEFREE Our data revealed that ASCL1 is overexpressed in progressive astrocytoma as evidenced by increased levels of ASCL1 transcripts in 85.71% (6/7) of grade II diffuse astrocytoma (DA), 90% (9/10) of grade III anaplastic astrocytoma (AA) and 87.5% (7/8) of secondary GBMs, while the majority of primary de novo GBMs expressed similar to or less than normal brain levels (66.67%; 8/12). 16103883 2005
Entrez Id: 3685
Gene Symbol: ITGAV
ITGAV
0.010 AlteredExpression disease BEFREE As we have found that Lyn, but not Fyn, activity promotes migration of glioblastoma cells in response to the cooperative signal generated by platelet-derived growth factor receptor beta and integrin alpha(v)beta3, we compared the activity and expression of Lyn and Fyn in glioblastoma (grade IV) tumor biopsy samples with that in anaplastic astrocytoma (grade III) tumors, nonneoplastic brain, and normal autopsy brain samples. 15994925 2005