Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1441008398
rs1441008398
APC
0.010 GeneticVariation BEFREE Using NGS, the following mutations were detected: nonsense mutations in four tumor suppressor genes [APC R1114X (molecular argument that the cancer was a primary tumor of colon), TP53 R213X, RB1 E137X and FBWX7 R393X & S282X], mutations in three receptor tyrosine kinases (RET A919V of high transforming activity, EGFR E114K and FLT3 L601I) well known as oncogenes. 28730258

2017

dbSNP: rs876660427
rs876660427
APC
0.010 GeneticVariation BEFREE Using NGS, the following mutations were detected: nonsense mutations in four tumor suppressor genes [APC R1114X (molecular argument that the cancer was a primary tumor of colon), TP53 R213X, RB1 E137X and FBWX7 R393X & S282X], mutations in three receptor tyrosine kinases (RET A919V of high transforming activity, EGFR E114K and FLT3 L601I) well known as oncogenes. 28730258

2017

dbSNP: rs459552
rs459552
APC
0.010 GeneticVariation BEFREE When the analysis was restricted to our 'super-controls', healthy individuals with no family history for cancer, also rs1799977:A>G (MLH1 I219V) was associated with an increased risk in both colon and rectum patients with an odds ratio of 1.28 (CI=1.02-1.60) and 1.34 (CI=1.05-1.72), respectively (under the dominant model); while 2 SNPs, rs1800932:A>G (MSH6 P92P) and rs459552:T>A (APC D1822V) seemed to confer a protective effect. 20149637

2010

dbSNP: rs777980327
rs777980327
APC
0.010 GeneticVariation BEFREE The increased incidence of cancer in FDRs of index CRC patients with the p.V600E BRAF mutation may be explained by a genetic predisposition to develop cancer through the serrated pathway of colorectal carcinogenesis. 20570909

2010

dbSNP: rs781561221
rs781561221
APC
0.010 GeneticVariation BEFREE When the analysis was restricted to our 'super-controls', healthy individuals with no family history for cancer, also rs1799977:A>G (MLH1 I219V) was associated with an increased risk in both colon and rectum patients with an odds ratio of 1.28 (CI=1.02-1.60) and 1.34 (CI=1.05-1.72), respectively (under the dominant model); while 2 SNPs, rs1800932:A>G (MSH6 P92P) and rs459552:T>A (APC D1822V) seemed to confer a protective effect. 20149637

2010

dbSNP: rs559313229
rs559313229
APC
0.010 GeneticVariation BEFREE Frequency of the c.2260G>C (p.Ala754Pro) variant in isoform IV of the PML gene was higher in patients with colon polyposis and cancer than in the control group (P = 0.029). 19728758

2009

dbSNP: rs587783032
rs587783032
APC
0.010 GeneticVariation BEFREE Frequency of the c.2260G>C (p.Ala754Pro) variant in isoform IV of the PML gene was higher in patients with colon polyposis and cancer than in the control group (P = 0.029). 19728758

2009

dbSNP: rs762117133
rs762117133
APC
0.010 GeneticVariation BEFREE To determine if this finding could be replicated, we investigated the association between two FRZB polymorphisms (Arg324Gly and Arg200Trp) and the risk of colorectal adenoma and cancer in nested case-control studies. 19067193

2009

dbSNP: rs1439772141
rs1439772141
APC
0.010 GeneticVariation BEFREE Even rarer is the 1906G-->C MSH2 mutation carried by less than 1% of Ashkenazim, but as with other HNPCC mutations likely associated with a high risk of malignancy. 15516844

2004

dbSNP: rs755105138
rs755105138
APC
0.010 GeneticVariation BEFREE Even rarer is the 1906G-->C MSH2 mutation carried by less than 1% of Ashkenazim, but as with other HNPCC mutations likely associated with a high risk of malignancy. 15516844

2004

dbSNP: rs1322051434
rs1322051434
APC
0.010 GeneticVariation BEFREE The approach is demonstrated in two cancer data sets: BRCA1 R841W and APC I1307K. 9585599

1998

dbSNP: rs121913331
rs121913331
APC
0.020 GeneticVariation BEFREE Using NGS, the following mutations were detected: nonsense mutations in four tumor suppressor genes [APC R1114X (molecular argument that the cancer was a primary tumor of colon), TP53 R213X, RB1 E137X and FBWX7 R393X & S282X], mutations in three receptor tyrosine kinases (RET A919V of high transforming activity, EGFR E114K and FLT3 L601I) well known as oncogenes. 28730258

2017

dbSNP: rs121913331
rs121913331
APC
0.020 GeneticVariation BEFREE Arg1114X in APC gene, as a hot spot mutation in Chinese CRC, may predispose to the cancer metastasis of sporadic CRC. 17653897

2007

dbSNP: rs1463038513
rs1463038513
APC
0.100 GeneticVariation BEFREE In conclusion, the APC I1307K variant is a reliable marker for overall cancer risk (OR 2.53). 26421687

2016

dbSNP: rs1801155
rs1801155
APC
0.100 GeneticVariation BEFREE In conclusion, the APC I1307K variant is a reliable marker for overall cancer risk (OR 2.53). 26421687

2016

dbSNP: rs1463038513
rs1463038513
APC
0.100 GeneticVariation BEFREE An APC mutation (I1307K) was found in an index case of a non-Jewish woman and her son with attenuated familial adenomatous polyposis (A-FAP) and no family history of cancer. 22180177

2012

dbSNP: rs1801155
rs1801155
APC
0.100 GeneticVariation BEFREE An APC mutation (I1307K) was found in an index case of a non-Jewish woman and her son with attenuated familial adenomatous polyposis (A-FAP) and no family history of cancer. 22180177

2012

dbSNP: rs1463038513
rs1463038513
APC
0.100 GeneticVariation BEFREE There is currently only sporadic clinical genetic testing offered for this variant, as neither the exact increase in cancer risk and therefore the appropriate screening strategies for I1307K carriers, nor the acceptability of such testing in Jewish communities have been determined. 16195945

2005

dbSNP: rs1463038513
rs1463038513
APC
0.100 GeneticVariation BEFREE Together with former evidence of I1307K being a risk factor for colorectal cancer, these data suggest that colonoscopic surveillance for colorectal adenomas and cancer may be warranted in I1307K carriers, even in the absence of other identifiable risk factors. 16228836

2005

dbSNP: rs1801155
rs1801155
APC
0.100 GeneticVariation BEFREE Together with former evidence of I1307K being a risk factor for colorectal cancer, these data suggest that colonoscopic surveillance for colorectal adenomas and cancer may be warranted in I1307K carriers, even in the absence of other identifiable risk factors. 16228836

2005

dbSNP: rs1801155
rs1801155
APC
0.100 GeneticVariation BEFREE There is currently only sporadic clinical genetic testing offered for this variant, as neither the exact increase in cancer risk and therefore the appropriate screening strategies for I1307K carriers, nor the acceptability of such testing in Jewish communities have been determined. 16195945

2005

dbSNP: rs1463038513
rs1463038513
APC
0.100 GeneticVariation BEFREE One of the cancers associated with the I1307K mutation is prostate cancer (odds ratio 2.0, P = 0.14). 12856637

2003

dbSNP: rs1801155
rs1801155
APC
0.100 GeneticVariation BEFREE One of the cancers associated with the I1307K mutation is prostate cancer (odds ratio 2.0, P = 0.14). 12856637

2003

dbSNP: rs1463038513
rs1463038513
APC
0.100 GeneticVariation BEFREE We conclude that early age at diagnosis and family history of cancer cannot be used to predict who is likely to harbour the I1307K APC germline mutation carriers. 11720476

2001

dbSNP: rs1801155
rs1801155
APC
0.100 GeneticVariation BEFREE We conclude that early age at diagnosis and family history of cancer cannot be used to predict who is likely to harbour the I1307K APC germline mutation carriers. 11720476

2001