Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs2004640
rs2004640
0.010 GeneticVariation BEFREE Although we could not demonstrate susceptibility toward lupus in the presence of IRF5 rs2004640 (G/T) polymorphism, further exploration of the genetic variability of IRF5 may help uncover its pathogenic role in Indian SLE patients. 30168487

2018

dbSNP: rs292001
rs292001
0.010 GeneticVariation BEFREE C1q rs292001 polymorphism and C1q antibodies in juvenile lupus and their relation to lupus nephritis. 26095468

2015

dbSNP: rs11889341
rs11889341
0.010 GeneticVariation BEFREE Consistent with expression quantitative trait locus (eQTL) analysis, the l</span>upus risk allele of rs11889341 decreased the activity of this putative repressor. 29912393

2018

dbSNP: rs13023380
rs13023380
0.010 GeneticVariation BEFREE DNA carrying the intronic risk allele rs13023380 showed reduced binding efficiency to a cellular protein complex including nucleolin and lupus autoantigen Ku70/80, and showed reduced transcriptional activity in vivo. 23441136

2013

dbSNP: rs370504038
rs370504038
0.010 GeneticVariation BEFREE Five heterozygous mutations were detected at the Y305C polymorphism in European lupus cases but none were observed in European controls. 21270825

2011

dbSNP: rs7574865
rs7574865
0.020 GeneticVariation BEFREE For the first time, we have shown that the polymorphisms located in the <i>STAT4</i> (rs7574865), but not in the <i>ITGAM</i> (rs1143679) nor the <i>TNXB</i> (rs1150754) genes, might be associated with the development of DLE within the Polish population. 28670251

2017

dbSNP: rs1143679
rs1143679
0.020 GeneticVariation BEFREE For the first time, we have shown that the polymorphisms located in the <i>STAT4</i> (rs7574865), but not in the <i>ITGAM</i> (rs1143679) nor the <i>TNXB</i> (rs1150754) genes, might be associated with the development of DLE within the Polish population. 28670251

2017

dbSNP: rs1150754
rs1150754
0.010 GeneticVariation BEFREE For the first time, we have shown that the polymorphisms located in the <i>STAT4</i> (rs7574865), but not in the <i>ITGAM</i> (rs1143679) nor the <i>TNXB</i> (rs1150754) genes, might be associated with the development of DLE within the Polish population. 28670251

2017

dbSNP: rs3093061
rs3093061
CRP
0.010 GeneticVariation BEFREE Four of the polymorphisms showed differences between patients and controls. rs3093061 polymorphism was associated with a lower risk of developing lupus principally in the codominant 2 (OR = 0.219, 95% CI 0.108-0.785, P = 0.015) model. rs1130864 was associated with decreased risk mainly under codominant 1 (OR = 0.288, 95% CI 0.143-0.581, P = 0.001) model. rs1205 was associated under the over-dominant model (OR = 0.504, 95% CI 0.270-0.942, P = 0.032). 29556849

2018

dbSNP: rs1130864
rs1130864
CRP
0.010 GeneticVariation BEFREE Four of the polymorphisms showed differences between patients and controls. rs3093061 polymorphism was associated with a lower risk of developing lupus principally in the codominant 2 (OR = 0.219, 95% CI 0.108-0.785, P = 0.015) model. rs1130864 was associated with decreased risk mainly under codominant 1 (OR = 0.288, 95% CI 0.143-0.581, P = 0.001) model. rs1205 was associated under the over-dominant model (OR = 0.504, 95% CI 0.270-0.942, P = 0.032). 29556849

2018

dbSNP: rs1205
rs1205
CRP
0.010 GeneticVariation BEFREE Four of the polymorphisms showed differences between patients and controls. rs3093061 polymorphism was associated with a lower risk of developing lupus principally in the codominant 2 (OR = 0.219, 95% CI 0.108-0.785, P = 0.015) model. rs1130864 was associated with decreased risk mainly under codominant 1 (OR = 0.288, 95% CI 0.143-0.581, P = 0.001) model. rs1205 was associated under the over-dominant model (OR = 0.504, 95% CI 0.270-0.942, P = 0.032). 29556849

2018

dbSNP: rs1270942
rs1270942
0.010 GeneticVariation BEFREE Importantly, our data suggest that in patients with lupus, the presence of the HLA lupus risk alleles in rs1270942 and rs3131379 increases the odds of also carrying the lupus risk allele in IRF5 (rs2070197) by 17% and 16%, respectively (P = 0.0028 and P = 0.0047, respectively). 21952918

2012

dbSNP: rs3131379
rs3131379
0.010 GeneticVariation BEFREE Importantly, our data suggest that in patients with lupus, the presence of the HLA lupus risk alleles in rs1270942 and rs3131379 increases the odds of also carrying the lupus risk allele in IRF5 (rs2070197) by 17% and 16%, respectively (P = 0.0028 and P = 0.0047, respectively). 21952918

2012

dbSNP: rs2070197
rs2070197
0.010 GeneticVariation BEFREE Importantly, our data suggest that in patients with lupus, the presence of the HLA lupus risk alleles in rs1270942 and rs3131379 increases the odds of also carrying the lupus risk allele in IRF5 (rs2070197) by 17% and 16%, respectively (P = 0.0028 and P = 0.0047, respectively). 21952918

2012

dbSNP: rs1188383936
rs1188383936
F2
0.010 GeneticVariation BEFREE In this study, we evaluated 40 patients with antiphospholipid syndrome and thrombosis, 31 primary and nine secondary to systemic lupus erythemathosus, to estimate the carrier rates of factor V Leiden, 20210A --> G prothrombin variant and 677C --> T in the MTHFR gene. 11085290

2000

dbSNP: rs1217691063
rs1217691063
0.010 GeneticVariation BEFREE In this study, we evaluated 40 patients with antiphospholipid syndrome and thrombosis, 31 primary and nine secondary to systemic lupus erythemathosus, to estimate the carrier rates of factor V Leiden, 20210A --> G prothrombin variant and 677C --> T in the MTHFR gene. 11085290

2000

dbSNP: rs2275913
rs2275913
0.010 GeneticVariation BEFREE Interleukin-17A rs2275913, Interleukin-17F rs763780 and rs2397084 gene polymorphisms as possible risk factors in Juvenile lupus and lupus related nephritis. 26515887

2016

dbSNP: rs763780
rs763780
0.010 GeneticVariation BEFREE Interleukin-17A rs2275913, Interleukin-17F rs763780 and rs2397084 gene polymorphisms as possible risk factors in Juvenile lupus and lupus related nephritis. 26515887

2016

dbSNP: rs2397084
rs2397084
0.010 GeneticVariation BEFREE Interleukin-17A rs2275913, Interleukin-17F rs763780 and rs2397084 gene polymorphisms as possible risk factors in Juvenile lupus and lupus related nephritis. 26515887

2016

dbSNP: rs1518110
rs1518110
0.010 GeneticVariation BEFREE Meanwhile, significant difference in genotype frequency at rs1518110 and rs1518111 were found in patients with and without lupus headache (P=0.025, P=0.038, respectively). 29199038

2018

dbSNP: rs1518111
rs1518111
0.010 GeneticVariation BEFREE Meanwhile, significant difference in genotype frequency at rs1518110 and rs1518111 were found in patients with and without lupus headache (P=0.025, P=0.038, respectively). 29199038

2018

dbSNP: rs12583006
rs12583006
0.010 GeneticVariation BEFREE Moreover, the presence of the AA genotype of the rs12583006 BAFF gene variant increased susceptibility for both lupus and lupus related plaque formation (ORs [95%CI]: 2.8 [1.1-7.1], and 4.4 [1.3-15.4] in the codominant model, respectively). 29859654

2018

dbSNP: rs3810936
rs3810936
0.010 GeneticVariation BEFREE Our findings indicate that gene polymorphisms (rs3810936, rs7848647) of TL1A might correlate with lupus. 31081141

2019

dbSNP: rs7848647
rs7848647
0.010 GeneticVariation BEFREE Our findings indicate that gene polymorphisms (rs3810936, rs7848647) of TL1A might correlate with lupus. 31081141

2019

dbSNP: rs3813946
rs3813946
CR2
0.020 GeneticVariation BEFREE Single-nucleotide polymorphism 1 (rs3813946), located in the 5' untranslated region of the CR2 gene, altered transcriptional activity, suggesting a potential mechanism by which CR2 could contribute to the development of lupus. 17360460

2007