Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE Frequency of the LRRK2 G2019S mutation in South African patients with Parkinson's disease. 31493133

2019

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE Among the several LRRK2 pathogenic mutations, the most prevalent G2019S mutation increases its kinase activity when compared with the wild-type (WT), suggesting that LRRK2 kinase substrates are potential culprits of PD pathogenesis. 31138985

2019

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE G2019S Variation in LRRK2: An Ideal Model for the Study of Parkinson's Disease? 31551736

2019

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE In Asian populations, the Gly2019Ser mutation is rare or absent but two other LRRK2 variants, Gly2385Arg and Arg1628PPro, increase PD risk. 30133089

2019

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE In this study, we derived induced pluripotent stem cells (iPSCs) from an Ashkenazi Jewish patient with G2019S LRRK2 mutation to isolate self-renewable multipotent neural stem cells (NSCs) and to model this form of PD in vitro. 31330122

2019

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE The clinical characteristics of Parkinson's disease (PD) associated with both the LRRK2 p.G2019S mutation and a GBA variant (LRRK2-GBA-PD) have not yet been determined. 30573413

2019

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE To characterize its effect on astrocytes, we developed a protocol to produce midbrain-patterned astrocytes from human induced pluripotent stem cells (iPSCs) derived from PD LRRK2 G2019S patients and healthy controls. 31085228

2019

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE In this study, we generate isogenic 3D midbrain organoids with or without a Parkinson's disease-associated LRRK2 G2019S mutation to study the pathogenic mechanisms associated with LRRK2 mutation. 30799274

2019

dbSNP: rs34778348
rs34778348
0.900 GeneticVariation BEFREE Studies on various global populations have determined that mutations such as G2019S, G2385R, and R1628P in LRRK2 increase the risk of developing PD while the N551K-R1398H haplotype is associated with conferring protection against developing PD. 31487119

2019

dbSNP: rs34778348
rs34778348
0.900 GeneticVariation BEFREE G2019S variant is rare in Asian populations, whereas two other Asian-specific LRRK2 variants, G2385R and R1628P, are more frequent with a twofold increased risk of PD. 31041581

2019

dbSNP: rs34778348
rs34778348
0.900 GeneticVariation BEFREE In Asian populations, the Gly2019Ser mutation is rare or absent but two other LRRK2 variants, Gly2385Arg and Arg1628PPro, increase PD risk. 30133089

2019

dbSNP: rs34778348
rs34778348
0.900 GeneticVariation BEFREE Effect of LRRK2 G2385R Variant on Subthalamic Deep Brain Stimulation Efficacy in Parkinson's Disease in a Han Chinese Population. 31824408

2019

dbSNP: rs356219
rs356219
0.900 GeneticVariation BEFREE Further subgroup analysis showed that PD+RBD patients with rs356219/G exhibited a 30% and 20% decreased risk of progression on the H-Y stage and MoCA score (<i>p</i> = 0.038; <i>p</i> = 0.045). 31244647

2019

dbSNP: rs356219
rs356219
0.900 GeneticVariation BEFREE In the discovery series cohort, we found a 4-loci interaction involving STK11 rs8111699, FCHSD1 rs456998, GSK3B rs1732170, and SNCA rs356219, which was associated with an increased risk of PD (odds ratio = 2.59, P < .001). 31234232

2019

dbSNP: rs356219
rs356219
0.900 GeneticVariation BEFREE The results indicate that there is a significant association between rs356219 polymorphism and PD susceptibility for all genetic models (allelic: OR = 1.377, 95% CI: 1.275-1.487, p = 0.000; homozygous: OR = 1.958, 95% CI: 1.666-2.301, p = 0.000; heterozygous: OR = 1.261, 95% CI: 1.158-1.373, p = 0.000; dominant: OR = 1.431, 95% CI: 1.320-1.550, p = 0.000; recessive: OR = 1.632, 95% CI: 1.431-1.861, p = 0.000), which is consistent with the results of the subgroup analyses on Asians and Caucasians. 31325583

2019

dbSNP: rs356219
rs356219
0.900 GeneticVariation BEFREE The SNCA rs356219-G allele was found to increase the risk of PD in LRRK2 carriers (OR 1.50, 95%CI 1.08-2.01, P = 0.016), and the AAO of AG + GG genotypes was 4 years earlier than AA genotype (P = 0.006). 31041581

2019

dbSNP: rs11931074
rs11931074
0.900 GeneticVariation BEFREE In conclusion, our meta-analysis further indicates that the SNCA rs11931074 polymorphism contributes to PD susceptibility. 30120622

2018

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE Generation of an induced pluripotent stem cell line (CSC-41) from a Parkinson's disease patient carrying a p.G2019S mutation in the LRRK2 gene. 29414418

2018

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE SIGNIFICANCE OF THE STUDY: Leucine-rich repeat kinase 2 (LRRK2) is the most common genetic cause of Parkinson disease (PD), and the most prevalent pathogenic mutation, G2019S, increases its kinase activity. 30411383

2018

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE We then generated and tested HD CAV-2 vectors expressing leucine-rich repeat kinase 2 (LRRK2) and LRRK2 carrying a G2019S mutation (LRRK2G2019S), which is linked to sporadic and familial autosomal dominant forms of PD. 30046008

2018

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE Clustering of motor and nonmotor traits in leucine-rich repeat kinase 2 G2019S Parkinson's disease nonparkinsonian relatives: A multicenter family study. 29665080

2018

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE Mito-Ca<sup>2+</sup> homeostasis is also altered in the LRRK2-G2019S model of PD and the PAR-1/MARK model of neurodegeneration, and genetic or pharmacological restoration of mito-Ca<sup>2+</sup> level is beneficial in these models. 30185553

2018

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE Thus, our aim was to explore possible early alterations of neurotransmission produced by the G2019S LRRK2 mutation in PD. 29908325

2018

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE To further investigate this link in vivo, genetic RNAi screens of the MAPK pathways were performed in a Drosophila model to identify genetic modifier(s) that can suppress G2019S-Lrrk2-induced PD-like phenotypes. 29268033

2018

dbSNP: rs34637584
rs34637584
0.900 GeneticVariation BEFREE These data suggest that enhanced AGE-RAGE interaction contributes to LRRK2 G2019S mutation-mediated progressive neuronal loss in PD. 29387348

2018