Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs121909222
rs121909222
0.010 GeneticVariation BEFREE Targeted Pten deletion plus p53-R270H mutation in mouse mammary epithelium induces aggressive claudin-low and basal-like breast cancer. 26781438

2016

dbSNP: rs1047972
rs1047972
0.010 GeneticVariation BEFREE Three SNPs (rs6014711, rs911162, rs1047972) had positive associations with basal-like breast cancer, and ORs reduced or close to 1.00 for other subtypes. 25328151

2015

dbSNP: rs6099128
rs6099128
0.010 GeneticVariation BEFREE In the race-combined analyses, rs6099128 had reduced ORs for luminal A (OR = 0.76, 95% CI = 0.60-0.95) and basal-like breast cancer (OR = 0.54, 95% CI = 0.37-0.80). 25328151

2015

dbSNP: rs11075995
rs11075995
FTO
0.010 GeneticVariation BEFREE Of the four breast cancer subtypes, the associations of rs12493607 (3p24.1/TGFBR2) with HER-2 overexpression in breast cancer (P = 1.09 × 10(-3)) and rs11075995 (16q12.2/FTO) with basal-like breast cancer (P = 1.64 × 10(-4)) were statistically significant. 25007960

2014

dbSNP: rs12493607
rs12493607
0.010 GeneticVariation BEFREE Of the four breast cancer subtypes, the associations of rs12493607 (3p24.1/TGFBR2) with HER-2 overexpression in breast cancer (P = 1.09 × 10(-3)) and rs11075995 (16q12.2/FTO) with basal-like breast cancer (P = 1.64 × 10(-4)) were statistically significant. 25007960

2014

dbSNP: rs3104746
rs3104746
0.010 GeneticVariation BEFREE Several SNPs in TNRC9/TOX3 were associated with luminal A (ER/PR+, HER2-) or basal-like breast cancer (ER-, PR-, HER2-, HER1, or CK 5/6+), and one SNP (rs3104746) was associated with both. 24177593

2014

dbSNP: rs9436746
rs9436746
0.010 GeneticVariation BEFREE Few patterns were observed among tag SNPs, with the exception of 3 LEPR SNPs (rs17412175, rs9436746, and rs9436748) that were in moderate LD and inversely associated with basal-like breast cancer. 21516303

2011

dbSNP: rs9436748
rs9436748
0.010 GeneticVariation BEFREE Few patterns were observed among tag SNPs, with the exception of 3 LEPR SNPs (rs17412175, rs9436746, and rs9436748) that were in moderate LD and inversely associated with basal-like breast cancer. 21516303

2011

dbSNP: rs2070235
rs2070235
0.010 GeneticVariation BEFREE We also identified a significant association between the G/G genotype of a nonsynonymous B-Myb germline variant (rs2070235, S427G) and an increased risk of basal-like breast cancer [OR 2.0, 95% CI (1.1-3.8)]. 19043454

2009