Disease: Malignant neoplasm of breast
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs2278749
ARNTL
0.882 0.160 11 13376331 intron variant C/T snv 0.15 3
rs2306074
ARNTL2-AS1 ; ARNTL2
0.882 0.160 12 27402853 intron variant T/C snv 0.37 3
rs11014002
MIR603 ; KIAA1217
0.851 0.200 10 24275724 non coding transcript exon variant C/A;T snv 4.1E-06; 7.3E-02 4
rs2274756
MMP9 ; SLC12A5-AS1
0.851 0.200 20 46014472 missense variant G/A;C snv 4
rs2279357
CYP11A1
0.851 0.160 15 74338282 intron variant T/C snv 0.69 5
rs140501902
PSEN2
0.807 0.160 1 226883774 missense variant C/T snv 3.6E-03 3.4E-03 6
rs1008805
MIR4713HG ; CYP19A1
0.851 0.160 15 51257402 intron variant G/A snv 0.64 7
rs700519
MIR4713HG ; CYP19A1
0.752 0.280 15 51215771 missense variant G/A snv 7.6E-02 8.0E-02 11
rs4684677
GHRLOS ; GHRL
0.742 0.360 3 10286769 missense variant T/A snv 0.10 6.6E-02 13
rs2233678
PIN1 ; LOC100996288
0.732 0.360 19 9834503 non coding transcript exon variant G/A;C snv 14
rs2077647
ESR1
0.732 0.320 6 151807942 synonymous variant T/A;C snv 8.1E-06; 0.46 16
rs4646
MIR4713HG ; CYP19A1
0.716 0.360 15 51210647 3 prime UTR variant A/C snv 0.67 0.70 16
rs10046
MIR4713HG ; CYP19A1
0.708 0.400 15 51210789 3 prime UTR variant G/A snv 0.45 0.43 18
rs1065852
NDUFA6-DT ; LOC112268294 ; CYP2D6
0.695 0.360 22 42130692 missense variant G/A snv 0.21 0.19 19
rs4746
GLO1
0.708 0.400 6 38682852 missense variant T/A;G snv 0.36 21
rs10719
DROSHA
0.677 0.680 5 31401340 3 prime UTR variant A/G;T snv 0.69 24
rs743572
CYP17A1
0.672 0.360 10 102837395 5 prime UTR variant A/G;T snv 0.40; 8.1E-06 24
rs156697
GSTO2
0.672 0.560 10 104279427 missense variant A/G;T snv 0.35 25
rs10735810
VDR
0.662 0.640 12 47879112 start lost A/C;G;T snv 26
rs531564
LINC00599 ; MIR124-1
0.672 0.480 8 9903189 non coding transcript exon variant G/C snv 0.14 27
rs4925
GSTO1
0.677 0.560 10 104263031 missense variant C/A snv 0.25 0.23 28
rs1001179
CAT
0.641 0.680 11 34438684 upstream gene variant C/T snv 0.16 33
rs4950928
CHI3L1
0.653 0.560 1 203186754 upstream gene variant G/A;C;T snv 33
rs689466
PACERR ; PTGS2
0.637 0.640 1 186681619 upstream gene variant T/C snv 0.17 33
rs1800206
PPARA
0.641 0.640 22 46218377 missense variant C/G snv 4.3E-02 4.2E-02 35