Disease: Lupus Erythematosus, Systemic
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs4774
CIITA
0.807 0.240 16 10906991 missense variant G/C snv 0.30 0.28 7
rs3087456
CIITA ; LOC105371080
0.742 0.480 16 10877045 intron variant G/A snv 0.53 14
rs10840759
CLEC4A
0.882 0.200 12 8138610 intron variant C/T snv 0.28 3
rs2377422
CLEC4A
0.882 0.200 12 8128312 intron variant C/T snv 0.60 3
rs9603612
COG6
0.925 0.120 13 39760715 intron variant C/G snv 0.30 2
rs34933034
CSK
0.925 0.120 15 74787133 intron variant G/A;T snv 3
rs3130618
CSNK2B ; GPANK1
0.827 0.360 6 31664357 missense variant C/A;T snv 0.15; 4.0E-06 7
rs231775
CTLA4
0.504 0.720 2 203867991 missense variant A/G;T snv 0.42; 4.0E-06 115
rs5742909
CTLA4
0.614 0.680 2 203867624 upstream gene variant C/T snv 6.7E-02 40
rs2242665
CYP21A2 ; SLC44A4
0.882 0.160 6 31871532 missense variant C/T snv 0.60 0.60 3
rs389883
CYP21A2 ; STK19
0.827 0.200 6 31979683 non coding transcript exon variant G/T snv 0.80 6
rs13101828
DGKQ
0.851 0.160 4 971932 intron variant A/G snv 0.43 6
rs35677470
DNASE1L3
0.807 0.160 3 58197909 missense variant G/A;C snv 4.8E-02; 4.0E-06 6
rs652888
EHMT2-AS1 ; EHMT2 ; LOC107986588 ; CYP21A2
0.776 0.480 6 31883457 non coding transcript exon variant A/G snv 0.18 0.20 10
rs535586
EHMT2 ; CYP21A2
0.882 0.160 6 31892560 splice region variant T/A;C snv 0.77 3
rs659445
EHMT2 ; CYP21A2 ; C2
0.882 0.160 6 31896527 intron variant G/A;C snv 0.77 0.76 3
rs4937333
ETS1
0.882 0.120 11 128460625 3 prime UTR variant T/C snv 0.45 4
rs2234767
FAS ; ACTA2
0.649 0.280 10 88989499 intron variant G/A;T snv 0.15 30
rs1801394
FASTKD3 ; MTRR
0.531 0.840 5 7870860 missense variant A/G snv 0.47 0.45 101
rs1801274
FCGR2A
0.597 0.800 1 161509955 missense variant A/C;G snv 4.0E-06; 0.48 46
rs1050501
FCGR2B
0.732 0.440 1 161674008 missense variant T/C snv 0.16 0.19 15
rs1308699981
FCGR3A
0.807 0.440 1 161543085 missense variant G/A snv 4.0E-06 7
rs396991
FCGR3A
0.742 0.480 1 161544752 missense variant A/C;G;T snv 0.33; 4.1E-06 14
rs200215055
FCGR3B
0.742 0.400 1 161626196 missense variant C/A;G;T snv 1.5E-03; 1.2E-05; 4.0E-06 11
rs560051377
FCGR3B
0.851 0.320 1 161624624 missense variant G/A;C snv 4.0E-06; 2.8E-05 5