DisGeNET - a database of gene-disease associations

List of shared variants

Ulcerative Colitis, C0009324

Disease: Inflammatory Bowel Diseases

Source: GWASCAT ×

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1077773	KCCAT333	1.000	0.040	7	17403055	intron variant	G/A;C	snv			2
rs10797432	LOC100996583	1.000	0.040	1	2569899	downstream gene variant	C/T	snv		0.51	2
rs10800309		0.925	0.120	1	161502368	upstream gene variant	A/G;T	snv			2
rs111456533	EEF1AKMT2	1.000	0.040	10	124750812	intron variant	G/A	snv		0.18	2
rs11150589	ITGAL	1.000	0.040	16	30471173	upstream gene variant	T/A;C;G	snv			2
rs11548656	PLCG2	1.000	0.040	16	81883307	missense variant	A/G	snv	2.5E-02	2.7E-02	2
rs11554257		1.000	0.040	9	114842790	upstream gene variant	T/C	snv		0.13	2
rs11672983		1.000	0.040	19	54871595	upstream gene variant	G/A	snv		0.35	2
rs16940202		1.000	0.040	16	85980635	intron variant	T/C	snv		0.15	2
rs17229285	LOC105373831	1.000	0.040	2	198658398	intron variant	C/A;T	snv			2
rs17656349	CAMK2A	1.000	0.040	5	150226431	intron variant	C/T	snv		0.45	2
rs1811711	CCL20	1.000	0.040	2	227805760	5 prime UTR variant	C/A;G	snv			2
rs2395128	DUPD1	1.000	0.040	10	75052692	intron variant	G/T	snv		0.32	2
rs254560	C5orf66	1.000	0.040	5	135107916	intron variant	G/A	snv		0.32	2
rs2651244		1.000	0.040	1	70529879	upstream gene variant	G/A	snv		0.30	2
rs3116494	CD28	0.882	0.120	2	203727298	intron variant	G/A	snv		0.76	2
rs35675666	PARK7	1.000	0.040	1	7961913	5 prime UTR variant	G/C;T	snv			2
rs4380874		1.000	0.040	7	107839870	intergenic variant	T/A;C;G	snv			2
rs4676408		1.000	0.040	2	240634984	downstream gene variant	G/A;T	snv		0.57	2
rs4743820	LINC00484 ; LOC100507103	1.000	0.040	9	91166134	non coding transcript exon variant	C/T	snv		0.61	2
rs483905	MAML2	1.000	0.040	11	96290263	intron variant	G/A	snv		0.26	2
rs501916	SEMA6D	1.000	0.040	15	47761032	synonymous variant	C/A	snv	0.40	0.41	2
rs561722	NXPE2	1.000	0.040	11	114516108	upstream gene variant	C/T	snv		0.35	2
rs6017342	LINC01620	0.925	0.120	20	44436388	non coding transcript exon variant	A/C	snv		0.62	2
rs6927022	HLA-DQA1 ; LOC107986589	1.000	0.040	6	32644620	non coding transcript exon variant	A/G	snv		0.42	2